Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   QYC34_RS09675 Genome accession   NZ_CP129338
Coordinates   1819211..1819660 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM126725     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1814211..1824660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS09635 (QYC34_09635) ctaE 1814228..1814851 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  QYC34_RS09640 (QYC34_09640) ctaF 1814854..1815186 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  QYC34_RS09645 (QYC34_09645) ctaG 1815214..1816107 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  QYC34_RS09650 (QYC34_09650) ylbA 1816139..1816501 (-) 363 WP_003232238.1 YugN family protein -
  QYC34_RS09655 (QYC34_09655) ylbB 1816641..1817087 (+) 447 WP_046160383.1 CBS domain-containing protein -
  QYC34_RS09660 (QYC34_09660) ylbC 1817171..1818211 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  QYC34_RS09665 (QYC34_09665) ylbD 1818442..1818840 (+) 399 WP_046160384.1 YlbD family protein -
  QYC34_RS09670 (QYC34_09670) ylbE 1818856..1819095 (+) 240 WP_003232231.1 YlbE-like family protein -
  QYC34_RS09675 (QYC34_09675) ylbF 1819211..1819660 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QYC34_RS09680 (QYC34_09680) ylbG 1819715..1819987 (+) 273 WP_024573211.1 YlbG family protein -
  QYC34_RS09685 (QYC34_09685) rsmD 1820310..1820864 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QYC34_RS09690 (QYC34_09690) coaD 1820869..1821354 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QYC34_RS09695 (QYC34_09695) spoVV 1821365..1822591 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  QYC34_RS09700 (QYC34_09700) ylbK 1822772..1823554 (+) 783 WP_046160385.1 patatin family protein -
  QYC34_RS09705 (QYC34_09705) sepM 1823556..1824581 (+) 1026 WP_046160386.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=778287 QYC34_RS09675 WP_003221370.1 1819211..1819660(+) (ylbF) [Bacillus subtilis strain SRCM126725]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=778287 QYC34_RS09675 WP_003221370.1 1819211..1819660(+) (ylbF) [Bacillus subtilis strain SRCM126725]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1