Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QYC34_RS01300 Genome accession   NZ_CP129338
Coordinates   246747..247343 (+) Length   198 a.a.
NCBI ID   WP_003225425.1    Uniprot ID   G4NT17
Organism   Bacillus subtilis strain SRCM126725     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 241747..252343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS01270 (QYC34_01270) sleL 241748..243031 (-) 1284 WP_129110418.1 glycoside hydrolase family 18 protein -
  QYC34_RS01275 (QYC34_01275) yaaI 243101..243646 (-) 546 WP_014478587.1 cysteine hydrolase family protein -
  QYC34_RS01280 (QYC34_01280) tadA 243732..244217 (+) 486 WP_003226784.1 tRNA adenosine(34) deaminase TadA -
  QYC34_RS01290 (QYC34_01290) dnaX 244694..246385 (+) 1692 WP_014478588.1 DNA polymerase III subunit gamma/tau -
  QYC34_RS01295 (QYC34_01295) ebfC 246409..246732 (+) 324 WP_003225427.1 YbaB/EbfC family nucleoid-associated protein -
  QYC34_RS01300 (QYC34_01300) recR 246747..247343 (+) 597 WP_003225425.1 recombination protein RecR Machinery gene
  QYC34_RS01305 (QYC34_01305) yaaL 247361..247585 (+) 225 WP_003242387.1 YaaL family protein -
  QYC34_RS01310 (QYC34_01310) bofA 247652..247915 (+) 264 WP_003225421.1 sigma-K factor-processing regulator BofA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21974.53 Da        Isoelectric Point: 5.3504

>NTDB_id=778229 QYC34_RS01300 WP_003225425.1 246747..247343(+) (recR) [Bacillus subtilis strain SRCM126725]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=778229 QYC34_RS01300 WP_003225425.1 246747..247343(+) (recR) [Bacillus subtilis strain SRCM126725]
ATGCAATATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGATGTAGTATTAGATTTTGCGAAAGCATTAGTAAATGCGAAACGCAACC
TGACATATTGTTCAGTTTGCGGGCATATTACAGATCAGGACCCTTGCTATATATGTGAAGATACGCGCAGGGATAAGTCT
GTTATCTGTGTTGTGCAAGACCCTAAGGATGTTATCGCTATGGAGAAAATGAAGGAATACAACGGACAGTATCACGTTCT
TCACGGCGCTATTTCTCCAATGGACGGCATTGGACCGGAGGATATTAAAATACCAGAATTGTTAAAACGATTACAGGATG
ATCAAGTGACAGAAGTGATCCTCGCGACAAACCCTAATATAGAAGGGGAAGCAACGGCGATGTATATATCAAGGCTCCTC
AAGCCGTCTGGTATTAAGCTCTCCCGTATTGCCCACGGACTGCCCGTCGGCGGTGACTTGGAATATGCTGACGAGGTCAC
TCTTTCTAAAGCACTTGAAGGAAGACGCGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

100

100

1
  recR Streptococcus pneumoniae R6

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.041

98.99

0.515