Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   QYH60_RS09630 Genome accession   NZ_CP129292
Coordinates   1921160..1922395 (-) Length   411 a.a.
NCBI ID   WP_012897750.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1916160..1927395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS09600 (QYH60_09600) - 1916171..1917454 (-) 1284 WP_015426353.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QYH60_RS09605 (QYH60_09605) - 1917473..1917970 (-) 498 WP_058207963.1 NUDIX domain-containing protein -
  QYH60_RS09610 (QYH60_09610) folP 1917973..1919046 (-) 1074 WP_301400858.1 dihydropteroate synthase -
  QYH60_RS09615 (QYH60_09615) folE 1919043..1920092 (-) 1050 WP_058202841.1 GTP cyclohydrolase I FolE -
  QYH60_RS09620 (QYH60_09620) folB 1920172..1920522 (-) 351 WP_301400860.1 dihydroneopterin aldolase -
  QYH60_RS09625 (QYH60_09625) yihA 1920576..1921163 (-) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QYH60_RS09630 (QYH60_09630) clpX 1921160..1922395 (-) 1236 WP_012897750.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QYH60_RS09635 (QYH60_09635) - 1922637..1923143 (-) 507 WP_010905786.1 dihydrofolate reductase -
  QYH60_RS09640 (QYH60_09640) - 1923543..1924052 (+) 510 WP_010905785.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  QYH60_RS09645 (QYH60_09645) - 1924602..1925906 (-) 1305 WP_033899494.1 nucleobase:cation symporter-2 family protein -
  QYH60_RS09650 (QYH60_09650) - 1925955..1926548 (-) 594 WP_301400862.1 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46024.89 Da        Isoelectric Point: 4.6053

>NTDB_id=778207 QYH60_RS09630 WP_012897750.1 1921160..1922395(-) (clpX) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MSNTQNPNIHCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=778207 QYH60_RS09630 WP_012897750.1 1921160..1922395(-) (clpX) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGTGGAAAGAGTCAAGATGATGTAAAAAAAATGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAATATGTGATAGGTCAAGAAAAAGCAAAA
CGTGCACTTGCAGTTGCCGTTTATAATCATTACAAACGAATTAATTTTACAGCAAGTAAAATTGCTGAAGATATTGAACT
ACAAAAATCAAATATTCTATTAATCGGACCTACCGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTCA
ATGTTCCGTTTGCGATTGCAGATGCGACAAGTTTGACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTCTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCTGAACGTGGAATTATCTATATCGATGAAATTGATAAAATTGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCCGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAAG
GGACAGTAGCTAGTGTTCCACCACAAGGTGGACGTAAACACCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATCGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAATGACGATGATTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTCGGATTAA
TCCCTGAATTTATTGGTCGTCTGCCAATTGTTGCTGCTTTGGAACGTCTGACCGAAGAGGATTTGATTCAAATTTTGACA
GAACCTAAAAACGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAGGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATTACAAAAGTTATTATTAATGAAGCAGTTGTTGACGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.808

97.567

0.749
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.883

95.864

0.564