Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QYH60_RS03815 Genome accession   NZ_CP129292
Coordinates   744007..744363 (+) Length   118 a.a.
NCBI ID   WP_301401359.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 739007..749363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS03780 (QYH60_03780) - 740747..741160 (+) 414 WP_301401349.1 DUF1617 family protein -
  QYH60_RS03785 (QYH60_03785) - 741162..741389 (+) 228 WP_301401351.1 hypothetical protein -
  QYH60_RS03790 (QYH60_03790) - 741414..741638 (+) 225 WP_010905920.1 hemolysin XhlA family protein -
  QYH60_RS03795 (QYH60_03795) - 741652..741939 (+) 288 WP_301401353.1 phage holin -
  QYH60_RS03800 (QYH60_03800) - 741939..742718 (+) 780 WP_301401355.1 peptidoglycan amidohydrolase family protein -
  QYH60_RS03805 (QYH60_03805) - 742796..743515 (+) 720 WP_301401357.1 hypothetical protein -
  QYH60_RS03810 (QYH60_03810) comGC 743676..743972 (+) 297 WP_167593410.1 competence type IV pilus major pilin ComGC Machinery gene
  QYH60_RS03815 (QYH60_03815) comGD 744007..744363 (+) 357 WP_301401359.1 competence type IV pilus minor pilin ComGD Machinery gene
  QYH60_RS03820 (QYH60_03820) comGE 744335..744631 (+) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  QYH60_RS03825 (QYH60_03825) comGF 744594..745040 (+) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  QYH60_RS03830 (QYH60_03830) comGG 745079..745363 (+) 285 WP_025017139.1 competence type IV pilus minor pilin ComGG Machinery gene
  QYH60_RS03835 (QYH60_03835) - 745445..745882 (+) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  QYH60_RS03840 (QYH60_03840) - 745879..746721 (+) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  QYH60_RS03845 (QYH60_03845) - 746898..747635 (+) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  QYH60_RS03850 (QYH60_03850) - 747628..748437 (+) 810 WP_014570791.1 metal ABC transporter permease -
  QYH60_RS03855 (QYH60_03855) - 748475..749341 (-) 867 WP_025017140.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13614.82 Da        Isoelectric Point: 7.9853

>NTDB_id=778162 QYH60_RS03815 WP_301401359.1 744007..744363(+) (comGD) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MIISFITTLFPSEIIQTVHLFKGELFVLQFENFYKRSQEEAALLQKSESLVAKNQELICEDRSITIPKEVAVKDFTVKFD
DKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 357 bp        

>NTDB_id=778162 QYH60_RS03815 WP_301401359.1 744007..744363(+) (comGD) [Lactococcus lactis subsp. lactis strain KMGR2-43]
TTGATTATTTCTTTTATCACAACTCTTTTTCCTTCAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAATTGTTTGT
TCTTCAATTTGAAAATTTCTATAAAAGGAGTCAAGAAGAGGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAA
ATCAAGAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGAT
GATAAGGGAGAGAATTCTAGCTTACAAAAACTCACAATTTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGA
GATAGGCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

64.957

99.153

0.644