Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   QYH60_RS02315 Genome accession   NZ_CP129292
Coordinates   458285..458503 (-) Length   72 a.a.
NCBI ID   WP_301401257.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 453285..463503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS02270 (QYH60_02270) - 453546..453800 (-) 255 WP_023189493.1 hypothetical protein -
  QYH60_RS02275 (QYH60_02275) - 454179..454453 (-) 275 Protein_436 hypothetical protein -
  QYH60_RS02280 (QYH60_02280) - 454515..454613 (-) 99 WP_223848594.1 lactococcin family bacteriocin -
  QYH60_RS02285 (QYH60_02285) - 454887..455066 (+) 180 WP_023163574.1 lactococcin family bacteriocin -
  QYH60_RS02290 (QYH60_02290) - 455087..455266 (+) 180 WP_301401256.1 hypothetical protein -
  QYH60_RS02295 (QYH60_02295) - 455575..456237 (+) 663 WP_021214959.1 type II CAAX endopeptidase family protein -
  QYH60_RS02300 (QYH60_02300) - 456545..456901 (-) 357 WP_235586237.1 transporter -
  QYH60_RS02305 (QYH60_02305) - 457329..458039 (-) 711 WP_058208202.1 CPBP family intramembrane glutamic endopeptidase -
  QYH60_RS02310 (QYH60_02310) - 458054..458191 (-) 138 WP_021214958.1 lactococcin family bacteriocin -
  QYH60_RS02315 (QYH60_02315) comB/nlmE 458285..458503 (-) 219 WP_301401257.1 hypothetical protein Regulator
  QYH60_RS02320 (QYH60_02320) - 458942..459067 (+) 126 WP_255457161.1 hypothetical protein -
  QYH60_RS02325 (QYH60_02325) - 459141..459359 (+) 219 WP_228766829.1 hypothetical protein -
  QYH60_RS02330 (QYH60_02330) - 459462..460118 (-) 657 WP_021214956.1 type II CAAX endopeptidase family protein -
  QYH60_RS02335 (QYH60_02335) - 460157..460609 (-) 453 WP_010905096.1 transporter -
  QYH60_RS02340 (QYH60_02340) - 460818..460976 (-) 159 WP_201248927.1 lactococcin family bacteriocin -
  QYH60_RS02345 (QYH60_02345) - 461070..462491 (-) 1422 WP_167593267.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8159.71 Da        Isoelectric Point: 10.6682

>NTDB_id=778148 QYH60_RS02315 WP_301401257.1 458285..458503(-) (comB/nlmE) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MKLTGIFLLFLIFKSFPTIFKEGNAYKVSATTAINAKDLPNIRYGLQGKTVTIIGKKTYFNYFLDKIMGRTS

Nucleotide


Download         Length: 219 bp        

>NTDB_id=778148 QYH60_RS02315 WP_301401257.1 458285..458503(-) (comB/nlmE) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGAAATTGACGGGTATATTTCTTTTATTTTTAATTTTTAAATCTTTTCCTACTATCTTTAAAGAAGGAAATGCTTATAA
AGTTTCTGCGACAACCGCTATCAATGCAAAAGACCTCCCAAATATAAGGTATGGCTTGCAAGGAAAAACGGTGACCATTA
TTGGAAAGAAAACTTATTTCAATTACTTTTTAGATAAAATTATGGGGAGGACTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

48.214

77.778

0.375
  comB Streptococcus mutans UA159

46.429

77.778

0.361