Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QYH60_RS01015 Genome accession   NZ_CP129292
Coordinates   211228..211824 (-) Length   198 a.a.
NCBI ID   WP_003131648.1    Uniprot ID   Q9CIL6
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 206228..216824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS01000 (QYH60_01000) - 206843..208495 (-) 1653 WP_058208280.1 peptide ABC transporter substrate-binding protein -
  QYH60_RS01005 (QYH60_01005) murF 208665..209987 (-) 1323 WP_301401228.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  QYH60_RS01010 (QYH60_01010) - 210062..211111 (-) 1050 WP_012897191.1 D-alanine--D-alanine ligase -
  QYH60_RS01015 (QYH60_01015) recR 211228..211824 (-) 597 WP_003131648.1 recombination mediator RecR Machinery gene
  QYH60_RS01020 (QYH60_01020) - 211963..214128 (-) 2166 WP_058208279.1 penicillin-binding transpeptidase domain-containing protein -
  QYH60_RS01025 (QYH60_01025) ahpF 214294..215823 (-) 1530 WP_021722378.1 alkyl hydroperoxide reductase subunit F -
  QYH60_RS01030 (QYH60_01030) ahpC 215889..216452 (-) 564 WP_003131651.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21909.22 Da        Isoelectric Point: 4.8226

>NTDB_id=778142 QYH60_RS01015 WP_003131648.1 211228..211824(-) (recR) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MYYPEPIARLIESFSKLPGIGQKTATRLAFYTIGMEDQDVNEFAKNLLSAKRDLSFCSICGNLTESDPCAICTDPTRDRT
TILVVEESKDVLAMEKIREYRGLYHVLHGTISPMNGISPDEINVKTLITRLMDSEVKEVIIATNATSDGEATAMYLARMI
KPAGIKVTRLARGLAVGSDIEYADEITLSKAVENRLEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=778142 QYH60_RS01015 WP_003131648.1 211228..211824(-) (recR) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGTATTATCCTGAACCTATTGCTCGCCTGATTGAGTCGTTTTCAAAATTACCAGGGATTGGTCAAAAAACAGCGACTCG
ATTGGCTTTTTATACGATTGGCATGGAAGATCAAGATGTCAATGAATTTGCAAAAAATCTTCTGTCAGCAAAACGGGATT
TGAGTTTTTGCTCGATTTGTGGGAATTTAACAGAAAGTGATCCTTGCGCCATTTGTACCGACCCAACGCGTGATCGAACA
ACTATATTGGTCGTTGAAGAATCTAAAGATGTTCTTGCTATGGAAAAAATTCGGGAATATCGAGGACTTTATCATGTTTT
GCATGGTACGATTAGTCCAATGAATGGGATTTCTCCTGATGAAATTAATGTTAAAACATTGATTACAAGATTAATGGATT
CAGAGGTTAAAGAAGTGATTATCGCAACTAATGCCACTTCTGACGGAGAAGCAACCGCCATGTATCTGGCTCGAATGATT
AAGCCTGCAGGAATTAAAGTGACTCGCTTGGCTCGTGGATTAGCTGTAGGATCTGATATAGAATACGCAGATGAAATTAC
TTTATCAAAAGCGGTAGAGAATCGGTTGGAAATTTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

78.283

100

0.783
  recR Bacillus subtilis subsp. subtilis str. 168

59.596

100

0.596
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485