Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QYN11_RS09655 Genome accession   NZ_CP129279
Coordinates   2014247..2014903 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain GZM7     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2009247..2019903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN11_RS09625 (QYN11_09620) dcyD 2010126..2011112 (+) 987 WP_001128218.1 D-cysteine desulfhydrase -
  QYN11_RS09630 (QYN11_09625) tcyL 2011127..2011795 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QYN11_RS09635 (QYN11_09630) tcyN 2011792..2012544 (+) 753 WP_001273008.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QYN11_RS09640 (QYN11_09635) sdiA 2012774..2013496 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  QYN11_RS09645 (QYN11_09640) yecF 2013564..2013788 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QYN11_RS09650 (QYN11_09645) yecU 2013775..2013951 (-) 177 WP_000590347.1 protein YecU -
  QYN11_RS26880 - 2014034..2014105 (-) 72 Protein_1885 transcriptional regulator -
  QYN11_RS09655 (QYN11_09650) letA 2014247..2014903 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QYN11_RS09660 (QYN11_09655) uvrC 2014900..2016732 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QYN11_RS09665 (QYN11_09660) pgsA 2016789..2017337 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QYN11_RS09685 (QYN11_09680) yecA 2017987..2018652 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=778088 QYN11_RS09655 WP_000611335.1 2014247..2014903(+) (letA) [Escherichia coli strain GZM7]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=778088 QYN11_RS09655 WP_000611335.1 2014247..2014903(+) (letA) [Escherichia coli strain GZM7]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486