Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QYF44_RS06185 Genome accession   NZ_CP129269
Coordinates   1268722..1269459 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain STEC1589     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263722..1274459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYF44_RS06155 (QYF44_06155) yfiL 1263880..1264245 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  QYF44_RS06160 (QYF44_06160) aroF 1264455..1265525 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QYF44_RS06165 (QYF44_06165) tyrA 1265536..1266657 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QYF44_RS06170 (QYF44_06170) pheA 1266700..1267860 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  QYF44_RS06175 (QYF44_06175) pheL 1267959..1268006 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QYF44_RS06180 (QYF44_06180) raiA 1268110..1268451 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QYF44_RS06185 (QYF44_06185) comL 1268722..1269459 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QYF44_RS06190 (QYF44_06190) rluD 1269594..1270574 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QYF44_RS06195 (QYF44_06195) yfiH 1270571..1271302 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  QYF44_RS06200 (QYF44_06200) clpC 1271432..1274005 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=777914 QYF44_RS06185 WP_000197686.1 1268722..1269459(-) (comL) [Escherichia coli strain STEC1589]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=777914 QYF44_RS06185 WP_000197686.1 1268722..1269459(-) (comL) [Escherichia coli strain STEC1589]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376