Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QYF47_RS09400 Genome accession   NZ_CP129263
Coordinates   1955444..1956100 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain STEC1588     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1950444..1961100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYF47_RS09370 (QYF47_09370) dcyD 1951324..1952310 (+) 987 WP_001128219.1 D-cysteine desulfhydrase -
  QYF47_RS09375 (QYF47_09375) tcyL 1952325..1952993 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QYF47_RS09380 (QYF47_09380) tcyN 1952990..1953742 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QYF47_RS09385 (QYF47_09385) sdiA 1953972..1954694 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  QYF47_RS09390 (QYF47_09390) yecF 1954761..1954985 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QYF47_RS09395 (QYF47_09395) yecU 1954972..1955148 (-) 177 WP_000590347.1 protein YecU -
  QYF47_RS25140 - 1955231..1955302 (-) 72 Protein_1838 transcriptional regulator -
  QYF47_RS09400 (QYF47_09400) letA 1955444..1956100 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QYF47_RS09405 (QYF47_09405) uvrC 1956097..1957929 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QYF47_RS09410 (QYF47_09410) pgsA 1957986..1958534 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QYF47_RS09430 (QYF47_09430) yecA 1959184..1959849 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=777846 QYF47_RS09400 WP_000611335.1 1955444..1956100(+) (letA) [Escherichia coli strain STEC1588]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=777846 QYF47_RS09400 WP_000611335.1 1955444..1956100(+) (letA) [Escherichia coli strain STEC1588]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486