Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QYF42_RS09440 Genome accession   NZ_CP129259
Coordinates   1959647..1960303 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain STEC1587     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1954647..1965303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYF42_RS09410 (QYF42_09410) dcyD 1955526..1956512 (+) 987 WP_113440697.1 D-cysteine desulfhydrase -
  QYF42_RS09415 (QYF42_09415) tcyL 1956527..1957195 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QYF42_RS09420 (QYF42_09420) tcyN 1957192..1957944 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QYF42_RS09425 (QYF42_09425) sdiA 1958174..1958896 (+) 723 WP_001154287.1 transcriptional regulator SdiA -
  QYF42_RS09430 (QYF42_09430) yecF 1958964..1959188 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QYF42_RS09435 (QYF42_09435) yecU 1959175..1959351 (-) 177 WP_000590347.1 protein YecU -
  QYF42_RS25425 - 1959389..1959505 (-) 117 WP_001302039.1 hypothetical protein -
  QYF42_RS09440 (QYF42_09440) letA 1959647..1960303 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QYF42_RS09445 (QYF42_09445) uvrC 1960300..1962132 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QYF42_RS09450 (QYF42_09450) pgsA 1962189..1962737 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QYF42_RS09470 (QYF42_09470) yecA 1963387..1964052 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=777768 QYF42_RS09440 WP_000611335.1 1959647..1960303(+) (letA) [Escherichia coli strain STEC1587]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=777768 QYF42_RS09440 WP_000611335.1 1959647..1960303(+) (letA) [Escherichia coli strain STEC1587]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
TAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCTAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486