Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QYC25_RS06835 Genome accession   NZ_CP129252
Coordinates   1367797..1368534 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain STEC1585     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1362797..1373534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC25_RS06805 (QYC25_06805) yfiL 1362955..1363320 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  QYC25_RS06810 (QYC25_06810) aroF 1363530..1364600 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QYC25_RS06815 (QYC25_06815) tyrA 1364611..1365732 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QYC25_RS06820 (QYC25_06820) pheA 1365775..1366935 (-) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  QYC25_RS06825 (QYC25_06825) pheL 1367034..1367081 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  QYC25_RS06830 (QYC25_06830) raiA 1367185..1367526 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QYC25_RS06835 (QYC25_06835) comL 1367797..1368534 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QYC25_RS06840 (QYC25_06840) rluD 1368669..1369649 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QYC25_RS06845 (QYC25_06845) yfiH 1369646..1370377 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  QYC25_RS06850 (QYC25_06850) clpC 1370507..1373080 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=777675 QYC25_RS06835 WP_000197686.1 1367797..1368534(-) (comL) [Escherichia coli strain STEC1585]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=777675 QYC25_RS06835 WP_000197686.1 1367797..1368534(-) (comL) [Escherichia coli strain STEC1585]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376