Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PFZ56_RS14735 Genome accession   NZ_CP116502
Coordinates   3166806..3167441 (+) Length   211 a.a.
NCBI ID   WP_162884118.1    Uniprot ID   -
Organism   Pseudomonas danubii strain JDS02PS016     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3161806..3172441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ56_RS14715 (PFZ56_14640) - 3162055..3162987 (+) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  PFZ56_RS14720 (PFZ56_14645) - 3162984..3163763 (+) 780 WP_102863930.1 ABC transporter permease -
  PFZ56_RS14725 (PFZ56_14650) - 3163817..3164332 (-) 516 WP_102863929.1 DUF2062 domain-containing protein -
  PFZ56_RS14730 (PFZ56_14655) comA 3164472..3166703 (+) 2232 WP_170003435.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PFZ56_RS14735 (PFZ56_14660) exbB 3166806..3167441 (+) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PFZ56_RS14740 (PFZ56_14665) - 3167438..3167866 (+) 429 WP_102863926.1 biopolymer transporter ExbD -
  PFZ56_RS14745 (PFZ56_14670) lpxK 3167866..3168876 (+) 1011 WP_110595196.1 tetraacyldisaccharide 4'-kinase -
  PFZ56_RS14750 (PFZ56_14675) - 3168900..3169085 (+) 186 WP_011060103.1 Trm112 family protein -
  PFZ56_RS14755 (PFZ56_14680) kdsB 3169082..3169846 (+) 765 WP_170003433.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PFZ56_RS14760 (PFZ56_14685) - 3169846..3170310 (+) 465 WP_110595198.1 low molecular weight protein-tyrosine-phosphatase -
  PFZ56_RS14765 (PFZ56_14690) murB 3170307..3171326 (+) 1020 WP_102878923.1 UDP-N-acetylmuramate dehydrogenase -
  PFZ56_RS14770 (PFZ56_14695) - 3171578..3172048 (+) 471 WP_102878924.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22939.10 Da        Isoelectric Point: 7.3617

>NTDB_id=777649 PFZ56_RS14735 WP_162884118.1 3166806..3167441(+) (exbB) [Pseudomonas danubii strain JDS02PS016]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=777649 PFZ56_RS14735 WP_162884118.1 3166806..3167441(+) (exbB) [Pseudomonas danubii strain JDS02PS016]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTGTGGGCATCATCGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGAGTCACCCCGCCCCATTTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGAGAAACTCAAGGAACTGCGTGCCGATTCGCCCCTGGGAGAGATCCTGGCAGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCCCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGATCGGGCATGACCAGCAACGCTGCAGTGCTTGCCGGTGGTATTTCCAAGGCACTGATCACCACTGCC
GCCGGTTTGATGGTGGGCATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877