Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PFZ56_RS14730 Genome accession   NZ_CP116502
Coordinates   3164472..3166703 (+) Length   743 a.a.
NCBI ID   WP_170003435.1    Uniprot ID   -
Organism   Pseudomonas danubii strain JDS02PS016     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3159472..3171703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ56_RS14705 (PFZ56_14630) - 3160597..3161256 (+) 660 WP_170003437.1 transglutaminase family protein -
  PFZ56_RS14710 (PFZ56_14635) - 3161299..3161922 (+) 624 WP_110652138.1 glutathione S-transferase family protein -
  PFZ56_RS14715 (PFZ56_14640) - 3162055..3162987 (+) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  PFZ56_RS14720 (PFZ56_14645) - 3162984..3163763 (+) 780 WP_102863930.1 ABC transporter permease -
  PFZ56_RS14725 (PFZ56_14650) - 3163817..3164332 (-) 516 WP_102863929.1 DUF2062 domain-containing protein -
  PFZ56_RS14730 (PFZ56_14655) comA 3164472..3166703 (+) 2232 WP_170003435.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PFZ56_RS14735 (PFZ56_14660) exbB 3166806..3167441 (+) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PFZ56_RS14740 (PFZ56_14665) - 3167438..3167866 (+) 429 WP_102863926.1 biopolymer transporter ExbD -
  PFZ56_RS14745 (PFZ56_14670) lpxK 3167866..3168876 (+) 1011 WP_110595196.1 tetraacyldisaccharide 4'-kinase -
  PFZ56_RS14750 (PFZ56_14675) - 3168900..3169085 (+) 186 WP_011060103.1 Trm112 family protein -
  PFZ56_RS14755 (PFZ56_14680) kdsB 3169082..3169846 (+) 765 WP_170003433.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PFZ56_RS14760 (PFZ56_14685) - 3169846..3170310 (+) 465 WP_110595198.1 low molecular weight protein-tyrosine-phosphatase -
  PFZ56_RS14765 (PFZ56_14690) murB 3170307..3171326 (+) 1020 WP_102878923.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81427.85 Da        Isoelectric Point: 10.7664

>NTDB_id=777648 PFZ56_RS14730 WP_170003435.1 3164472..3166703(+) (comA) [Pseudomonas danubii strain JDS02PS016]
MVTGMLALAAGLLALGFMPVLPPGWLLLLMAIGGLMLLPFRTHPVAFFLFGLAWACASGQWALDDRLPQSLDGQTRWLEG
RVVGLPEPGAGVVRFELKDAQSRRERLPRRIRLAWHGGPPVNSGERWRLAVKLRRPAGLLNLHGFDYEAWLLARRIGATG
TVKDGQLLAPARQAWRDGLRQRLLAVEAHGRAAGLAALVMGDGSGLTREDWQLLQDTGTVHLMVISGQHISLLAAVIYLA
VAGLARYGLWPARWPWLPWACALAFVGALGYGLLAGFDVPVQRACVMVALVLLWRWRFRHLRAWWPLLLALNAVLLFEPL
ASLQPGFWLSYAAVAVLIFTFAGRLGSWRWWQSWTRAQWLMGIGLLPPLLALGLPISLSGPLANLLAVPWISLLVLPSAL
LGCLLLPVPYVGEGLLWLAGGLLDGLFRLLGAMAGLWPAWVAPLIPLWVWGLSSLGALLLLLPKGVPLRVLGWPLLLLAV
WPPQDPVPEGEVEIWQLDVGQGLSFILRTRDHAMLYDAGARVADFDLGERVVLPTLRKLGIRRLDLMLLSHADNDHAGGA
LAVQRGIPVSQVRSGEPEALPAALQSAPCDSGLSWHWNGARFTLWQWTGAADGNQASCVLLVEAGGERLLLSGDIDVHAE
RALLDSPLAVRIHWLQAPHHGSRTSSSMALLRRLAPKAVLISRGRGNAFGHPHPQVVARYRQLGMVIHDSAEQGALKLRL
GTFGQPESLRQQRRFWRDWPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=777648 PFZ56_RS14730 WP_170003435.1 3164472..3166703(+) (comA) [Pseudomonas danubii strain JDS02PS016]
ATGGTTACAGGGATGCTGGCCCTGGCCGCAGGACTGCTGGCGCTGGGTTTCATGCCGGTGCTGCCGCCCGGCTGGTTGTT
GCTGCTGATGGCGATAGGGGGGCTGATGTTGCTGCCTTTTCGTACACATCCGGTGGCATTTTTTTTGTTCGGTTTGGCCT
GGGCCTGTGCATCCGGGCAATGGGCGCTGGATGATCGCCTGCCTCAGTCCCTGGATGGGCAAACCCGCTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGAACCGGGGGCGGGCGTGGTGCGCTTTGAGCTCAAGGATGCCCAGTCCCGACGAGAGCGCCT
GCCGCGGCGAATTCGCCTGGCCTGGCACGGTGGGCCACCCGTCAATAGCGGCGAACGCTGGCGCCTGGCGGTCAAGCTGC
GGCGTCCTGCCGGTCTGCTCAATCTTCACGGTTTCGATTACGAAGCCTGGCTGCTGGCCCGGCGCATTGGGGCCACCGGC
ACAGTCAAGGATGGGCAACTGCTGGCGCCGGCACGCCAAGCCTGGCGTGACGGTCTGCGCCAGCGTTTACTCGCGGTCGA
GGCCCACGGCCGCGCCGCAGGCCTGGCGGCATTGGTGATGGGCGACGGTTCGGGGCTGACGCGGGAAGATTGGCAACTGT
TGCAGGACACCGGCACGGTGCACCTGATGGTGATATCCGGACAGCACATCAGCCTGCTGGCCGCAGTGATCTACCTTGCC
GTGGCAGGGCTGGCTCGTTACGGGCTTTGGCCTGCGCGCTGGCCCTGGCTGCCCTGGGCCTGCGCCCTGGCCTTTGTCGG
GGCGCTGGGCTACGGCCTGCTGGCAGGGTTCGATGTGCCGGTGCAGAGGGCCTGCGTGATGGTTGCGCTGGTGCTGCTCT
GGCGCTGGCGCTTTCGTCACCTGCGGGCTTGGTGGCCCTTGTTGCTGGCGTTGAATGCAGTGCTGTTGTTCGAGCCCCTG
GCCAGCTTGCAGCCAGGGTTCTGGCTGTCCTATGCCGCGGTGGCGGTGCTCATCTTCACCTTTGCCGGGCGCCTGGGTTC
CTGGCGTTGGTGGCAGAGTTGGACCCGCGCCCAGTGGTTGATGGGTATTGGCCTGTTGCCACCCTTGCTGGCCCTTGGCT
TGCCCATCAGTCTCAGTGGTCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGTCTGCTGGTCCTGCCTTCGGCCTTG
CTGGGCTGCCTGTTGTTGCCTGTGCCTTATGTGGGTGAAGGCCTGTTATGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGCTTACTGGGGGCGATGGCCGGATTATGGCCAGCCTGGGTGGCGCCGTTGATCCCCCTTTGGGTTTGGGGCCTGAGCA
GCCTGGGCGCGCTGTTGTTGCTGTTGCCCAAGGGCGTGCCACTGCGGGTGCTGGGTTGGCCGTTGTTGCTGTTGGCAGTC
TGGCCTCCCCAGGACCCTGTACCCGAGGGCGAGGTGGAGATCTGGCAGCTGGATGTGGGGCAGGGTTTGTCGTTCATCCT
GCGTACCCGTGATCACGCGATGTTGTACGACGCCGGTGCCCGGGTCGCGGATTTCGACCTGGGGGAGCGAGTGGTGCTGC
CGACGCTGCGTAAGCTTGGCATTCGACGGCTGGACTTGATGCTGCTCAGCCACGCCGATAACGATCATGCCGGAGGCGCC
CTGGCAGTCCAGCGCGGGATACCGGTGAGCCAGGTGCGCAGCGGCGAGCCCGAGGCCTTGCCGGCTGCCCTGCAGTCGGC
CCCCTGTGATAGCGGGCTGAGCTGGCACTGGAATGGCGCCCGCTTCACGCTGTGGCAGTGGACGGGGGCGGCAGACGGCA
ATCAGGCTTCCTGTGTGCTGCTGGTCGAGGCCGGCGGCGAACGCCTGCTGCTCAGCGGTGATATCGATGTCCATGCTGAG
CGGGCTTTGCTCGACAGTCCGCTGGCGGTTCGCATTCACTGGTTGCAGGCGCCCCATCATGGCAGCCGTACCTCATCGTC
CATGGCCTTGCTCCGGCGGCTGGCGCCGAAGGCGGTGCTGATTTCCCGGGGGCGGGGCAATGCCTTTGGCCATCCTCATC
CCCAGGTGGTGGCGCGCTACCGGCAATTGGGCATGGTGATTCATGACAGTGCCGAGCAAGGCGCACTGAAGCTGCGGCTG
GGGACTTTCGGCCAGCCTGAAAGCCTGCGCCAACAGCGGCGCTTCTGGCGCGACTGGCCAGCAATGCCTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-682)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.017

96.501

0.618