Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PFZ56_RS01070 Genome accession   NZ_CP116502
Coordinates   216061..217389 (+) Length   442 a.a.
NCBI ID   WP_170002394.1    Uniprot ID   -
Organism   Pseudomonas danubii strain JDS02PS016     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 211061..222389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ56_RS01050 (PFZ56_01030) pgeF 212695..213420 (-) 726 WP_102882248.1 peptidoglycan editing factor PgeF -
  PFZ56_RS01055 (PFZ56_01035) rluD 213417..214379 (-) 963 WP_102865461.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PFZ56_RS01060 (PFZ56_01040) - 214530..215552 (+) 1023 WP_102882249.1 outer membrane protein assembly factor BamD -
  PFZ56_RS01065 (PFZ56_01045) - 215677..215910 (+) 234 WP_102882404.1 PP0621 family protein -
  PFZ56_RS01070 (PFZ56_01050) pilR 216061..217389 (+) 1329 WP_170002394.1 sigma-54 dependent transcriptional regulator Regulator
  PFZ56_RS01075 (PFZ56_01055) thiO 217386..218486 (-) 1101 WP_170002360.1 glycine oxidase ThiO -
  PFZ56_RS01080 (PFZ56_01060) - 218543..218944 (-) 402 WP_102882252.1 type IV pilin protein -
  PFZ56_RS01085 - 218960..219157 (-) 198 Protein_205 pilus assembly protein PilY -
  PFZ56_RS01090 (PFZ56_01070) - 219453..219893 (-) 441 WP_170002358.1 PilX N-terminal domain-containing pilus assembly protein -
  PFZ56_RS01095 (PFZ56_01075) - 219935..220645 (-) 711 WP_170002356.1 PilW family protein -
  PFZ56_RS01100 (PFZ56_01080) pilV 220642..221085 (-) 444 WP_170002354.1 type IV pilus modification protein PilV -
  PFZ56_RS01105 (PFZ56_01085) - 221476..222000 (+) 525 WP_102882256.1 GspH/FimT family protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49710.41 Da        Isoelectric Point: 8.0115

>NTDB_id=777634 PFZ56_RS01070 WP_170002394.1 216061..217389(+) (pilR) [Pseudomonas danubii strain JDS02PS016]
MNPMPRVLVVDEAMEVRALVEITLGRMRLHTQSARTLQEARTHLARERFDLCLTDLHLPDGSGLDLLLHIRQCHPQLPVA
LLSNDPGTQASALEVGACDLLHKPLHPMRLREWISSRLKRLPTTTKNLPDHQLLGHSPPMDNLRQHIDKLAPSLAAVYIS
GESGSGKERVARLIHQLGPRARAPFIPVNCGAIPGELMESEFFGHRKGSFSGALADQPGLFQAAEGGTLFLDEVADLPLA
MQVKLLRALQERSVRPVGSQEERAVDVRILCATHKDLKCEVESGRFRQDLYYRLNVIELRVPALRERPGDIEILARHILQ
RLAKSSDKPATQLSPQALQALERYDFPGNVRELENLLERAQTLCEGPWIELSDLHLPVSEHQDVPSPSLPPNLDLALHLQ
QVERHLLLQALEESRWNRTVAARRLSLSLRSMRYRMKKLGLN

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=777634 PFZ56_RS01070 WP_170002394.1 216061..217389(+) (pilR) [Pseudomonas danubii strain JDS02PS016]
ATGAACCCAATGCCCAGGGTGCTGGTGGTCGATGAGGCCATGGAAGTCCGTGCCCTCGTGGAAATCACCCTCGGCCGCAT
GCGCCTGCACACCCAAAGTGCCCGTACCTTGCAGGAAGCTCGGACTCACCTGGCCCGGGAGCGCTTCGACCTGTGCCTGA
CAGACCTGCATTTGCCGGATGGCAGCGGACTGGACCTGCTGCTGCATATTCGCCAATGCCACCCTCAATTGCCGGTCGCA
CTTCTAAGCAATGACCCAGGCACGCAGGCCAGCGCCCTGGAAGTCGGGGCTTGCGACCTGCTGCACAAGCCTCTACACCC
CATGCGCCTTCGAGAATGGATAAGCAGCAGACTGAAGCGGCTGCCCACCACCACAAAAAACCTACCCGACCATCAGTTGT
TGGGGCACTCACCGCCCATGGACAACCTGCGCCAACACATCGACAAGTTGGCCCCCAGCCTGGCAGCGGTCTACATCAGC
GGCGAATCCGGCAGTGGCAAGGAGCGAGTGGCGCGTTTGATCCACCAGTTGGGTCCCAGGGCCAGGGCGCCCTTCATTCC
GGTCAACTGTGGCGCCATTCCTGGCGAACTGATGGAGAGTGAGTTTTTCGGTCACCGCAAAGGCAGCTTCAGTGGCGCCC
TGGCTGATCAGCCTGGACTGTTCCAGGCCGCTGAGGGAGGAACCCTGTTCCTCGACGAGGTCGCCGACCTGCCTCTAGCC
ATGCAGGTGAAGCTACTGCGTGCACTGCAGGAAAGGTCTGTGCGCCCGGTGGGCAGCCAGGAGGAAAGAGCCGTCGATGT
GCGGATTCTCTGTGCCACTCACAAGGATCTGAAGTGTGAGGTAGAGTCCGGCCGCTTTCGCCAGGATCTCTACTACCGCT
TGAATGTGATCGAACTGCGAGTCCCCGCGCTGCGCGAGCGCCCAGGAGATATCGAGATACTGGCGCGGCATATTCTGCAA
CGCCTGGCCAAATCCAGCGACAAGCCTGCCACCCAACTAAGCCCGCAAGCACTGCAAGCCCTGGAGCGCTACGACTTTCC
CGGCAACGTACGTGAACTGGAAAACCTGCTGGAGCGGGCCCAGACCCTTTGCGAGGGTCCGTGGATCGAGCTGAGCGACC
TGCATCTGCCTGTCAGTGAACACCAGGACGTCCCGTCCCCCTCGCTCCCTCCCAACCTGGACCTCGCGCTGCACCTGCAA
CAGGTGGAGCGCCATTTACTGCTCCAGGCCCTGGAGGAAAGCCGCTGGAACCGCACGGTGGCGGCCCGACGGCTGAGTCT
GTCCTTGCGTTCGATGCGTTACCGCATGAAGAAGCTTGGCCTGAATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Sigma-54 interaction domain (Sigma54_activat)

(133-299)

Response regulator receiver domain (Response_reg)

(7-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.851

100

0.62
  pilR Acinetobacter baumannii strain A118

44.156

100

0.462