Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   BV187_RS02140 Genome accession   NZ_CP116490
Coordinates   444834..445373 (+) Length   179 a.a.
NCBI ID   WP_005654843.1    Uniprot ID   A0A0H3PFD4
Organism   Haemophilus influenzae strain 93P10H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439834..450373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV187_RS02120 (BV187_0434) - 440711..441592 (-) 882 WP_011961723.1 metal ABC transporter substrate-binding protein -
  BV187_RS02125 (BV187_0435) - 441899..442363 (+) 465 WP_011961722.1 hypothetical protein -
  BV187_RS02130 (BV187_0436) - 442457..443335 (-) 879 WP_011961721.1 D-alanyl-D-alanine carboxypeptidase family protein -
  BV187_RS02135 (BV187_0437) - 443582..444733 (+) 1152 WP_005662659.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  BV187_RS02140 (BV187_0438) pilF/pilF2 444834..445373 (+) 540 WP_005654843.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  BV187_RS02145 (BV187_0439) - 445445..446356 (+) 912 WP_011961720.1 RodZ domain-containing protein -
  BV187_RS02150 (BV187_0440) ispG 446365..447471 (+) 1107 WP_050822779.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  BV187_RS02155 (BV187_0441) hisS 447481..448752 (+) 1272 WP_011961717.1 histidine--tRNA ligase -
  BV187_RS02160 (BV187_0442) - 448770..449384 (+) 615 WP_005691752.1 YfgM family protein -
  BV187_RS02165 (BV187_0443) iscX 449435..449629 (-) 195 WP_005659903.1 Fe-S cluster assembly protein IscX -
  BV187_RS02170 (BV187_0444) fdx 449629..449970 (-) 342 WP_005656373.1 ISC system 2Fe-2S type ferredoxin -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20586.20 Da        Isoelectric Point: 8.2626

>NTDB_id=777570 BV187_RS02140 WP_005654843.1 444834..445373(+) (pilF/pilF2) [Haemophilus influenzae strain 93P10H1]
MKTISKQLSAVIFPFIFSACVSQSASNLNHQAAAKARVELALSYLQQNNPQLAKINLDKALQHDKNYYLVHSALAHYYQQ
QGEIENAHREYEIAVNLNHKQGDVHNNFGTFLCSQKKFEQAQQQFELALNSPNYYHQADTFENIVLCAYSAQKMDIYQQT
LEKLRQIDGKRAEKFNSLK

Nucleotide


Download         Length: 540 bp        

>NTDB_id=777570 BV187_RS02140 WP_005654843.1 444834..445373(+) (pilF/pilF2) [Haemophilus influenzae strain 93P10H1]
ATGAAAACAATAAGTAAACAACTAAGTGCGGTTATTTTTCCTTTTATTTTTTCTGCCTGCGTTTCACAATCTGCATCTAA
CTTAAATCATCAAGCTGCCGCTAAAGCTCGTGTGGAACTCGCTTTGAGCTATCTTCAGCAAAATAATCCTCAACTGGCTA
AAATCAATTTAGACAAAGCACTTCAACACGATAAAAATTACTATCTCGTGCATTCAGCACTTGCACATTATTATCAACAA
CAAGGGGAAATAGAGAATGCACATCGTGAATATGAAATAGCCGTAAACCTTAATCATAAACAAGGCGATGTGCATAATAA
TTTTGGTACGTTTCTATGTAGTCAAAAGAAATTTGAACAAGCCCAGCAACAATTTGAATTAGCACTTAATTCGCCAAATT
ATTATCATCAAGCAGATACATTTGAAAATATCGTGCTTTGTGCTTATTCCGCGCAAAAAATGGATATTTATCAGCAAACT
TTAGAAAAATTACGTCAAATCGATGGAAAACGTGCGGAAAAATTCAATAGTCTAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PFD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

97.765

100

0.978
  pilF Glaesserella parasuis strain SC1401

44.693

100

0.447