Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   BV189_RS05160 Genome accession   NZ_CP116489
Coordinates   1034385..1034672 (+) Length   95 a.a.
NCBI ID   WP_005655928.1    Uniprot ID   A0A0H3PGC3
Organism   Haemophilus influenzae strain 93P28H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1029385..1039672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV189_RS05135 (BV189_1044) nrfE 1029447..1031354 (-) 1908 WP_005659178.1 heme lyase NrfEFG subunit NrfE -
  BV189_RS05140 (BV189_1045) suhB 1031463..1032266 (-) 804 WP_005659182.1 inositol-1-monophosphatase -
  BV189_RS05145 (BV189_1046) comN 1032466..1032978 (+) 513 WP_005651545.1 pilus assembly FimT family protein Machinery gene
  BV189_RS05150 (BV189_1047) comO 1032978..1033694 (+) 717 WP_005655922.1 PulJ/GspJ family protein Machinery gene
  BV189_RS05155 (BV189_1048) comP 1033709..1034392 (+) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  BV189_RS05160 (BV189_1049) comQ 1034385..1034672 (+) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  BV189_RS05165 (BV189_1050) recC 1034718..1038083 (+) 3366 WP_005686198.1 exodeoxyribonuclease V subunit gamma -
  BV189_RS05170 (BV189_1051) nrdR 1038138..1038587 (+) 450 WP_005651549.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11033.81 Da        Isoelectric Point: 9.2205

>NTDB_id=777554 BV189_RS05160 WP_005655928.1 1034385..1034672(+) (comQ) [Haemophilus influenzae strain 93P28H1]
MNKGISFITLLFSLTLFSVLFLVFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=777554 BV189_RS05160 WP_005655928.1 1034385..1034672(+) (comQ) [Haemophilus influenzae strain 93P28H1]
ATGAATAAAGGAATATCTTTTATTACATTGTTATTTTCTTTAACTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTGAAAACTTATCAAGATTTTCAGGCAATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PGC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

95.789

100

0.958