Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BV189_RS01765 Genome accession   NZ_CP116489
Coordinates   374517..375209 (-) Length   230 a.a.
NCBI ID   WP_005686720.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 93P28H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369517..380209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV189_RS01730 (BV189_0359) - 371077..371283 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  BV189_RS01735 (BV189_0360) - 371369..371575 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  BV189_RS01740 (BV189_0361) - 371661..371867 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  BV189_RS01745 (BV189_0362) - 371953..372159 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  BV189_RS01750 (BV189_0363) cueR 372236..372622 (+) 387 WP_005654127.1 Cu(I)-responsive transcriptional regulator -
  BV189_RS01755 (BV189_0364) metJ 372636..372953 (-) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  BV189_RS01760 (BV189_0365) rho 373201..374463 (+) 1263 WP_005648966.1 transcription termination factor Rho -
  BV189_RS01765 (BV189_0366) pilD 374517..375209 (-) 693 WP_005686720.1 prepilin peptidase Machinery gene
  BV189_RS01770 (BV189_0367) pilC 375206..376423 (-) 1218 WP_005686722.1 type II secretion system F family protein Machinery gene
  BV189_RS01775 (BV189_0368) pilB 376420..377817 (-) 1398 WP_011961745.1 GspE/PulE family protein Machinery gene
  BV189_RS01780 (BV189_0369) pilA 377814..378263 (-) 450 WP_005686726.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BV189_RS01785 (BV189_0370) ampD 378378..378938 (+) 561 WP_005648974.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26677.71 Da        Isoelectric Point: 8.8394

>NTDB_id=777528 BV189_RS01765 WP_005686720.1 374517..375209(-) (pilD) [Haemophilus influenzae strain 93P28H1]
MIYFTMFLLGGIFGIALWFYLSGFITRLQQEIYATYIELFPQNFLPFQPSVSSIQQKKCGHILRYFLNVGVGFIFLQIAF
KDSIFAIWLGLTLLILWAISYLDWYYQLISTTPCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYGY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=777528 BV189_RS01765 WP_005686720.1 374517..375209(-) (pilD) [Haemophilus influenzae strain 93P28H1]
ATGATTTACTTCACAATGTTTTTATTAGGCGGCATCTTCGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTCCCACAAAACTTTCTGCCATTTCAGCCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAATGTTGGGGTAGGATTTATATTTTTACAAATTGCTTTC
AAGGACTCTATTTTCGCTATATGGCTAGGGCTCACACTTCTTATCCTTTGGGCAATTAGTTATCTTGATTGGTACTATCA
ACTTATTTCTACTACACCCTGTTTATGGCTACTTACAATCGGTTTATTTGGGGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGTATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACTTTGCCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATCATTTATTTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

90.435

100

0.904
  pilD Haemophilus influenzae Rd KW20

90

100

0.9