Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   LLNCDO702_RS04750 Genome accession   NZ_CP129159
Coordinates   941486..942481 (+) Length   331 a.a.
NCBI ID   WP_371400163.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain NCDO702     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 936486..947481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO702_RS04730 (LLNCDO702_04740) rpsA 937446..938672 (+) 1227 WP_003132594.1 30S ribosomal protein S1 -
  LLNCDO702_RS04735 (LLNCDO702_04745) - 938823..939539 (+) 717 WP_003132595.1 nucleoside phosphorylase -
  LLNCDO702_RS04740 (LLNCDO702_04750) pnuC 939667..940380 (+) 714 WP_003132596.1 nicotinamide riboside transporter PnuC -
  LLNCDO702_RS04745 uvrC 940475..941437 (+) 963 Protein_906 excinuclease ABC subunit UvrC -
  LLNCDO702_RS04750 uvrC 941486..942481 (+) 996 WP_371400163.1 hypothetical protein Machinery gene
  LLNCDO702_RS04755 (LLNCDO702_04760) mutY 942645..943808 (+) 1164 WP_003132598.1 A/G-specific adenine glycosylase -
  LLNCDO702_RS04760 (LLNCDO702_04765) pepV 943874..945292 (+) 1419 WP_003132599.1 dipeptidase PepV -
  LLNCDO702_RS04765 (LLNCDO702_04770) acpS 945395..945754 (+) 360 WP_003132600.1 holo-ACP synthase -
  LLNCDO702_RS04770 (LLNCDO702_04775) alr 945799..946902 (+) 1104 WP_003132601.1 alanine racemase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 37029.77 Da        Isoelectric Point: 10.1078

>NTDB_id=777328 LLNCDO702_RS04750 WP_371400163.1 941486..942481(+) (uvrC) [Lactococcus lactis subsp. lactis strain NCDO702]
MDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDIL
KTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTVVGADDYASMREVMTRRYSRAL
KEETALPDLIAMDGGAGQVNIAKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRF
AITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEADIPYEVAERVKTTLSGPIQENENWESL
KDNVPLLEGKK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=777328 LLNCDO702_RS04750 WP_371400163.1 941486..942481(+) (uvrC) [Lactococcus lactis subsp. lactis strain NCDO702]
GTGGATGCAAAAGTTTTTACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAGCAATCAATTGTTAAACTTGA
TAAAGAATTATCAGCCGAAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCGAGCCGTGGTGAGAAAA
AACAATTGGTTAATATGGCAACTAAGAATGCTCAAAGTCAATTACAATTGAAATTTGATGTGGCTGAGCGTGATATTTTG
AAAACGACTAAAGCGGTTGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAATCTTTTGATAATTC
AAATATTATGGGGACTTCACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAAT
ATAAAATTAAAACAGTGGTTGGTGCGGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCGCGAGCTTTA
AAAGAAGAAACGGCTCTTCCTGATTTGATTGCAATGGATGGTGGAGCTGGTCAAGTTAACATTGCCAAGCAAGTTTTAAA
AGAGCTTGGGCTATCGATTCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGATC
CTTTAGACGTGGTTCCCTTGTCAAGACAATCTCAAGAATTCTTTTTGCTGACCAGAATTCAAGATGAGGTTCACCGTTTT
GCGATTACATTCCATAGACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAA
ACGAAAACAAAAGTTACTGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTG
ACATTCCTTATGAAGTAGCAGAACGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTC
AAGGATAATGTTCCTCTTTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(92-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70.37

81.571

0.574
  uvrC Streptococcus pneumoniae D39

70.37

81.571

0.574
  uvrC Streptococcus pneumoniae TIGR4

70.37

81.571

0.574