Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PL336_RS09630 Genome accession   NZ_CP116423
Coordinates   1941350..1942420 (-) Length   356 a.a.
NCBI ID   WP_067261794.1    Uniprot ID   A0AAX3LKD2
Organism   Sulfitobacter faviae strain SCSIO W_1865     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1936350..1947420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL336_RS09615 (PL336_09615) - 1937453..1938178 (-) 726 WP_067261800.1 phosphatase PAP2 family protein -
  PL336_RS09620 (PL336_09620) - 1938264..1938551 (-) 288 WP_093741992.1 DUF1330 domain-containing protein -
  PL336_RS09625 (PL336_09625) alaS 1938557..1941214 (-) 2658 WP_271687343.1 alanine--tRNA ligase -
  PL336_RS09630 (PL336_09630) recA 1941350..1942420 (-) 1071 WP_067261794.1 recombinase RecA Machinery gene
  PL336_RS09635 (PL336_09635) - 1942624..1943217 (+) 594 WP_271687344.1 gamma-glutamyl kinase -
  PL336_RS09640 (PL336_09640) - 1943236..1945470 (-) 2235 WP_276155688.1 ATP-binding protein -
  PL336_RS09645 (PL336_09645) - 1945646..1946806 (-) 1161 WP_271687345.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37924.37 Da        Isoelectric Point: 4.9474

>NTDB_id=777316 PL336_RS09630 WP_067261794.1 1941350..1942420(-) (recA) [Sulfitobacter faviae strain SCSIO W_1865]
MATADLLTMDSKKTAEKQKALDSALAQIERQFGKGSIMKLGAEGAIQDIKASSTGSLGLDIALGIGGLPMGRIIEIYGPE
SSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYAKKLGVDIDELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAA
LTPKSELEGEMGDSNVGVQARLMSQAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRI
GALKDRDEVVGNATKVKIVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFSYGDERIGQGRENAKNF
LKQNTAMASEIEDKIRAAHGLDFEGSGGDDADILEA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=777316 PL336_RS09630 WP_067261794.1 1941350..1942420(-) (recA) [Sulfitobacter faviae strain SCSIO W_1865]
ATGGCAACGGCAGATCTTTTGACGATGGACAGTAAGAAAACCGCAGAAAAGCAAAAGGCGCTCGACAGCGCGCTGGCCCA
GATCGAACGTCAGTTCGGCAAAGGGTCGATTATGAAACTGGGGGCCGAAGGGGCGATCCAGGATATCAAAGCCAGCTCCA
CAGGCTCGCTTGGCCTTGATATCGCGCTTGGTATCGGTGGCTTGCCGATGGGGCGCATCATTGAGATTTATGGCCCGGAA
TCCTCGGGTAAGACAACGCTGACGCTGCATTGCGTGGCAGAGCAGCAGAAAGCGGGGGGCGTTTGCGCCTTTGTCGACGC
GGAACATGCCCTTGATCCGCAATATGCGAAAAAGCTTGGCGTGGACATTGACGAGCTGTTGATTTCCCAGCCCGACACGG
GTGAACAGGCGCTTGAGATCACCGATACGCTGGTACGCTCTGGCGCGGTCAATATGGTGATCGTCGACTCCGTCGCGGCC
CTGACGCCGAAATCCGAGCTTGAAGGTGAGATGGGTGACAGCAATGTCGGTGTTCAGGCCCGTTTGATGAGCCAAGCGAT
GCGCAAGCTCACCGGGTCGATCAGCCGGTCCAATTGTATGGTTATCTTCATCAACCAAATCCGGATGAAGATCGGCGTGA
TGTTCGGCTCTCCTGAGACCACCACCGGCGGCAACGCGCTGAAATTCTACTCCTCCGTCCGTCTCGACATCCGCCGGATC
GGCGCCCTGAAGGACCGAGACGAGGTTGTTGGCAACGCAACGAAGGTCAAGATCGTCAAGAACAAAGTGGCGCCACCCTT
CAAACAGGTCGAATTCGATATCATGTATGGCGAAGGCATTTCCAAAATGGGGGAGTTGCTGGACCTTGGGGTGAAGGCCG
GTGTGGTCGATAAATCCGGCTCGTGGTTCAGCTACGGGGATGAACGGATCGGGCAGGGGCGTGAGAACGCAAAGAACTTC
CTGAAACAGAACACTGCTATGGCGTCGGAGATCGAAGATAAGATCCGCGCGGCCCACGGGTTGGACTTTGAGGGCTCCGG
CGGTGACGACGCGGATATTCTTGAAGCTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.037

92.135

0.654
  recA Glaesserella parasuis strain SC1401

70.405

90.169

0.635
  recA Pseudomonas stutzeri DSM 10701

69.47

90.169

0.626
  recA Neisseria gonorrhoeae MS11

67.477

92.416

0.624
  recA Neisseria gonorrhoeae MS11

67.477

92.416

0.624
  recA Neisseria gonorrhoeae strain FA1090

67.477

92.416

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

66.767

92.978

0.621
  recA Acinetobacter baumannii D1279779

69.062

89.888

0.621
  recA Vibrio cholerae strain A1552

69.062

89.888

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.062

89.888

0.621
  recA Acinetobacter baylyi ADP1

68.438

89.888

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.776

94.101

0.61
  recA Helicobacter pylori strain NCTC11637

65.455

92.697

0.607
  recA Lactococcus lactis subsp. cremoris KW2

61.143

98.315

0.601
  recA Helicobacter pylori 26695

64.848

92.697

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

91.573

0.584
  recA Streptococcus pneumoniae R6

61.329

92.978

0.57
  recA Streptococcus mitis SK321

61.329

92.978

0.57
  recA Streptococcus mitis NCTC 12261

61.329

92.978

0.57
  recA Streptococcus pneumoniae TIGR4

61.329

92.978

0.57
  recA Streptococcus pneumoniae Rx1

61.329

92.978

0.57
  recA Streptococcus pneumoniae D39

61.329

92.978

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

61.656

91.573

0.565
  recA Streptococcus mutans UA159

59.697

92.697

0.553
  recA Streptococcus pyogenes NZ131

59.878

92.416

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

91.011

0.553