Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PIB33_RS06140 Genome accession   NZ_CP116391
Coordinates   1192087..1193238 (+) Length   383 a.a.
NCBI ID   WP_003245839.1    Uniprot ID   A0AAE2VB70
Organism   Bacillus subtilis strain GXD-20     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context

Location: 1187087..1198238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS06105 (PIB33_06105) yjbB 1187758..1188975 (+) 1218 WP_074794275.1 MFS transporter -
  PIB33_RS06110 (PIB33_06110) yjbC 1189140..1189718 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  PIB33_RS06115 (PIB33_06115) spx 1189899..1190294 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  PIB33_RS06120 (PIB33_06120) yjbE 1190337..1190993 (-) 657 WP_003232944.1 TerC family protein -
  PIB33_RS06125 (PIB33_06125) - 1191163..1191303 (+) 141 WP_119122854.1 hypothetical protein -
  PIB33_RS06130 (PIB33_06130) mecA 1191270..1191926 (+) 657 WP_003245194.1 adaptor protein MecA Regulator
  PIB33_RS06135 (PIB33_06135) - 1191921..1192043 (-) 123 WP_003245684.1 hypothetical protein -
  PIB33_RS06140 (PIB33_06140) coiA 1192087..1193238 (+) 1152 WP_003245839.1 competence protein CoiA Machinery gene
  PIB33_RS06145 (PIB33_06145) pepF 1193468..1195297 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  PIB33_RS06150 (PIB33_06150) - 1195335..1195502 (-) 168 WP_003244944.1 hypothetical protein -
  PIB33_RS06155 (PIB33_06155) spxH 1195816..1196715 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  PIB33_RS06160 (PIB33_06160) bhbI 1196712..1197110 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  PIB33_RS06165 (PIB33_06165) cwlQ 1197365..1198099 (-) 735 WP_003245645.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 44755.85 Da        Isoelectric Point: 10.0034

>NTDB_id=777007 PIB33_RS06140 WP_003245839.1 1192087..1193238(+) (coiA) [Bacillus subtilis strain GXD-20]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCAIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSTF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNK
NIALRSECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=777007 PIB33_RS06140 WP_003245839.1 1192087..1193238(+) (coiA) [Bacillus subtilis strain GXD-20]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCGCCATAGACATCGAGCCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAACTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGGCGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCAAAGGAAACAAATCGCCTTAGGCTGCTGTTTTATGAGAAACGACAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTCCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGAGGCATACACTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

100

97.389

0.974