Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   QWH96_RS09075 Genome accession   NZ_CP128987
Coordinates   1793682..1794716 (-) Length   344 a.a.
NCBI ID   WP_003062324.1    Uniprot ID   A0ABU0A592
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788682..1799716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS09040 (QWH96_09040) - 1789307..1789609 (-) 303 WP_003061832.1 YlxQ-related RNA-binding protein -
  QWH96_RS09045 (QWH96_09045) - 1789602..1789898 (-) 297 WP_003062190.1 YlxR family protein -
  QWH96_RS09050 (QWH96_09050) nusA 1789914..1791071 (-) 1158 WP_003057051.1 transcription termination factor NusA -
  QWH96_RS09055 (QWH96_09055) rimP 1791214..1791708 (-) 495 WP_044022604.1 ribosome maturation factor RimP -
  QWH96_RS09065 (QWH96_09065) trmB 1792191..1792826 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QWH96_RS09070 (QWH96_09070) - 1792826..1793617 (-) 792 WP_003052472.1 phosphotransferase family protein -
  QWH96_RS09075 (QWH96_09075) pptB 1793682..1794716 (-) 1035 WP_003062324.1 ABC transporter permease Regulator
  QWH96_RS09080 (QWH96_09080) pptA 1794719..1795444 (-) 726 WP_003057032.1 ABC transporter ATP-binding protein Regulator
  QWH96_RS09085 (QWH96_09085) - 1795516..1795935 (+) 420 WP_003057067.1 HIT family protein -
  QWH96_RS09090 (QWH96_09090) - 1795932..1796261 (+) 330 WP_003057072.1 hypothetical protein -
  QWH96_RS09095 (QWH96_09095) - 1796419..1797687 (-) 1269 WP_037589963.1 LCP family protein -
  QWH96_RS09100 (QWH96_09100) - 1797699..1798220 (-) 522 WP_003057063.1 GNAT family N-acetyltransferase -
  QWH96_RS09105 (QWH96_09105) tsaE 1798213..1798656 (-) 444 WP_014612541.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40056.25 Da        Isoelectric Point: 10.2471

>NTDB_id=776873 QWH96_RS09075 WP_003062324.1 1793682..1794716(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MKALFLKRRQDFQKQQSKYLRYVFNDHFVLVLMFLFGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQAERSALVIGGCLQTAILIFLYPIFNRLGFSLVTFALLLLGLLALKRLLLGYKVRQFLKKDG
LDWEKAIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNAYLSVALALVFNYLILFQLLSLYHHYDYHYMTSLYPENHQGKRANLLTFLRGLSCLILVINLLLCHSLEKA
LILVAVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=776873 QWH96_RS09075 WP_003062324.1 1793682..1794716(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAGAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGTTTGGTTTTTGCTTGGTGCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAATC
ATTGGCCTATATGGCTCTTTCTCATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGCTGAACGCTCTGCCCTTGTAAT
TGGGGGCTGTTTACAGACAGCTATCCTCATCTTTTTATATCCGATCTTCAATCGCCTAGGCTTCTCCTTAGTTACTTTTG
CTCTTTTACTTTTGGGATTACTAGCTCTTAAACGACTCCTTTTGGGGTATAAAGTAAGACAATTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGCCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TCTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTATTATTATTGAGT
TCCCTAGCCTTGCTGTTTATTTCTAACGCTTACCTATCAGTGGCTTTAGCCTTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACCACCATTACGATTACCACTACATGACTAGTCTTTATCCAGAGAATCATCAAGGGAAGCGGGCGA
ATCTATTGACTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTTATCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGCGGTCATGGGAGTTATTACGCTTTTCTACCTCCCTTATAAGTTGAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-153)

Bacterial ABC transporter protein EcsB (EcsB)

(151-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.512

100

0.465
  pptB Streptococcus salivarius strain HSISS4

46.221

100

0.462