Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   PK654_RS12905 Genome accession   NZ_CP116383
Coordinates   2761273..2761887 (+) Length   204 a.a.
NCBI ID   WP_271696178.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2756273..2766887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS12880 (PK654_12880) panC 2756889..2757743 (+) 855 WP_271696173.1 pantoate--beta-alanine ligase -
  PK654_RS12885 (PK654_12885) - 2757816..2758586 (-) 771 WP_271696174.1 ABC transporter permease -
  PK654_RS12890 (PK654_12890) - 2758587..2759504 (-) 918 WP_271696175.1 ABC transporter ATP-binding protein -
  PK654_RS12895 (PK654_12895) can 2759728..2760387 (+) 660 WP_271696176.1 carbonate dehydratase -
  PK654_RS12900 (PK654_12900) hpt 2760451..2760981 (-) 531 WP_271696177.1 hypoxanthine phosphoribosyltransferase -
  PK654_RS12905 (PK654_12905) opaR 2761273..2761887 (+) 615 WP_271696178.1 TetR/AcrR family transcriptional regulator Regulator
  PK654_RS12910 (PK654_12910) lpdA 2761989..2763416 (-) 1428 WP_271696179.1 dihydrolipoyl dehydrogenase -
  PK654_RS12915 (PK654_12915) aceF 2763626..2765215 (-) 1590 WP_271696180.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23849.23 Da        Isoelectric Point: 5.8382

>NTDB_id=776862 PK654_RS12905 WP_271696178.1 2761273..2761887(+) (opaR) [Vibrio sp. SCSIO 43137]
MDMVTKRPRTRLSPQKRKLQLMDIALEVFARRGIGRGGHADIAEVAQVSVATVFNYFPTREDLVDEVLHHVVRNFSGFLN
ENIDTSLHAKENLKNICHCMIDLVEEDSHWLKVWFEWSASTRDEVWPLYMSLNKNSRLLVQSMFEQSISRGEICDKQDTE
NLTKMFQAICYAIYLEAHRGTDREHLEMFADSFLNMLCIYKDDQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=776862 PK654_RS12905 WP_271696178.1 2761273..2761887(+) (opaR) [Vibrio sp. SCSIO 43137]
ATGGATATGGTAACGAAACGTCCACGGACTAGGCTTTCCCCACAAAAAAGAAAACTTCAATTGATGGATATCGCATTAGA
AGTTTTCGCCCGCAGAGGTATCGGTCGCGGTGGCCACGCTGATATCGCTGAAGTTGCACAAGTATCAGTTGCAACGGTAT
TTAACTACTTCCCGACTCGTGAAGATCTGGTTGATGAAGTATTGCATCATGTAGTACGTAATTTCTCCGGCTTCCTTAAC
GAAAATATCGACACTTCACTGCATGCAAAAGAGAACCTGAAAAACATCTGTCACTGTATGATTGATCTGGTTGAAGAAGA
CAGCCACTGGCTAAAAGTCTGGTTTGAGTGGAGTGCTTCCACCCGTGACGAAGTGTGGCCTCTTTATATGTCACTGAACA
AGAACAGCCGCCTGTTAGTACAGAGCATGTTTGAGCAGTCTATCAGCCGCGGCGAAATCTGCGATAAGCAAGACACAGAG
AACCTGACGAAGATGTTCCAGGCTATCTGCTACGCTATCTATCTGGAAGCGCACAGAGGAACAGACAGAGAGCATCTTGA
GATGTTTGCCGACAGCTTCCTGAATATGCTGTGCATCTATAAAGATGATCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

66.5

98.039

0.652
  hapR Vibrio cholerae C6706

63.317

97.549

0.618
  hapR Vibrio cholerae strain A1552

63.317

97.549

0.618