Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QWH96_RS07850 Genome accession   NZ_CP128987
Coordinates   1535351..1537012 (-) Length   553 a.a.
NCBI ID   WP_049519952.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1530351..1542012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS07825 (QWH96_07830) - 1531394..1531669 (-) 276 WP_003044261.1 HU family DNA-binding protein -
  QWH96_RS07830 (QWH96_07835) - 1531768..1532355 (-) 588 WP_003053329.1 YpmS family protein -
  QWH96_RS07835 (QWH96_07840) - 1532333..1533175 (-) 843 WP_015057871.1 SGNH/GDSL hydrolase family protein -
  QWH96_RS07840 (QWH96_07845) - 1533168..1534007 (-) 840 WP_100249543.1 DegV family protein -
  QWH96_RS07845 (QWH96_07850) - 1534248..1535144 (-) 897 WP_049519953.1 LPXTG cell wall anchor domain-containing protein -
  QWH96_RS07850 (QWH96_07855) recN 1535351..1537012 (-) 1662 WP_049519952.1 DNA repair protein RecN Machinery gene
  QWH96_RS07855 (QWH96_07860) - 1537031..1537501 (-) 471 WP_003056949.1 arginine repressor -
  QWH96_RS07860 (QWH96_07865) - 1537488..1538315 (-) 828 WP_003056952.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  QWH96_RS07865 (QWH96_07870) - 1538308..1539180 (-) 873 WP_003062185.1 polyprenyl synthetase family protein -
  QWH96_RS07870 (QWH96_07875) - 1539180..1539395 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  QWH96_RS07875 (QWH96_07880) xseA 1539373..1540713 (-) 1341 WP_165737255.1 exodeoxyribonuclease VII large subunit -
  QWH96_RS07880 (QWH96_07885) - 1540864..1541709 (-) 846 WP_003056961.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62341.58 Da        Isoelectric Point: 4.6472

>NTDB_id=776862 QWH96_RS07850 WP_049519952.1 1535351..1537012(-) (recN) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MLLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIETAALNRGEDERLGQERDRLLNHKKIADTLTNAYVMLDNDD
FSSLSNIRYSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEVEFRLDTLNSLTRKYGGNV
NDVLDYYDNIVKEYQLLTGDELSSGDLEAELKALEKQLVAAATNLSERRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=776862 QWH96_RS07850 WP_049519952.1 1535351..1537012(-) (recN) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGCTATTAGAAATTTCCATTAAAAATTTTGCCATTATTGAGGAAATCTCTCTGAATTTTGAAAATGGCATGACAGTTTT
GACAGGTGAAACAGGAGCTGGAAAGTCCATTATTATTGATGCCATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGGGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGACAGGTTATTGATAAACAAAAAAATGAAAAAGAACATAAAGA
TCGTATCGACATGTTGGCTTTTCAGATAGCGGAGATTGAAACTGCAGCTTTGAATCGAGGAGAGGATGAGCGACTAGGTC
AAGAACGTGATCGTTTGTTAAATCATAAGAAAATTGCTGATACCCTGACCAATGCTTATGTCATGCTAGATAATGACGAT
TTTTCAAGCCTATCCAATATTCGCTATAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAATACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAGTTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATCGTCAAAGAATACCAGCTATTAACAGGCGATGAGTTGTCTTCAGGGGATCT
AGAGGCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCAGCCACTAACTTGAGTGAACGCCGCCATCAATTGGCAG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAATTACTGGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.19

100

0.454