Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QWH96_RS07700 Genome accession   NZ_CP128987
Coordinates   1504574..1505236 (-) Length   220 a.a.
NCBI ID   WP_003057999.1    Uniprot ID   A0ABU0A4Z4
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499574..1510236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS07685 (QWH96_07690) sodA 1500527..1501132 (-) 606 WP_003054499.1 superoxide dismutase SodA -
  QWH96_RS07690 (QWH96_07695) holA 1501229..1502269 (-) 1041 WP_003054496.1 DNA polymerase III subunit delta -
  QWH96_RS07695 (QWH96_07700) comEC/celB 1502350..1504593 (-) 2244 WP_049519962.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QWH96_RS07700 (QWH96_07705) comEA 1504574..1505236 (-) 663 WP_003057999.1 helix-hairpin-helix domain-containing protein Machinery gene
  QWH96_RS07705 (QWH96_07710) - 1505633..1506373 (-) 741 WP_165737258.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  QWH96_RS07710 (QWH96_07715) - 1506491..1507267 (+) 777 WP_138128125.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QWH96_RS07715 (QWH96_07720) - 1507257..1507535 (+) 279 WP_049519961.1 GIY-YIG nuclease family protein -
  QWH96_RS07720 (QWH96_07725) - 1507559..1509559 (-) 2001 WP_014612436.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24080.46 Da        Isoelectric Point: 5.8872

>NTDB_id=776859 QWH96_RS07700 WP_003057999.1 1504574..1505236(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MIDDLLTKGTNSLKKVYSLPRLIGVVLAIFLILTLSFVIWGKEQSQTKLPIVSTSSSIQQPASEEKKYSSEESNILVDLK
GAVQQEGVYKLRANSRVRDVIELAGGLTQEADRHAVNFAEKLVDEQVVYVAKQGEDISVLPNASSAGKANAEMSNSTKVN
INKANLEELQRISGIGVKRAQDILETRDSLGGFKTLDDLRQVSGIGEKTLEKLKHELSLD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=776859 QWH96_RS07700 WP_003057999.1 1504574..1505236(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGATAGATGACTTGTTAACTAAAGGAACAAATAGCTTGAAAAAGGTTTATTCTCTGCCACGCTTGATTGGTGTTGTGTT
AGCCATTTTTCTGATACTAACCCTAAGTTTTGTTATCTGGGGCAAAGAGCAGAGTCAAACAAAACTTCCTATTGTATCAA
CTTCTTCTTCCATACAACAGCCAGCTAGTGAGGAAAAAAAGTATTCTTCAGAAGAGAGTAATATTTTAGTGGATTTAAAA
GGAGCCGTACAACAGGAGGGAGTTTATAAGCTCAGGGCTAATAGCCGTGTGCGCGATGTCATTGAATTAGCTGGGGGACT
TACTCAGGAAGCTGATAGACATGCTGTTAATTTTGCAGAAAAACTGGTGGATGAGCAGGTTGTGTATGTGGCTAAGCAGG
GTGAAGACATTTCTGTCTTGCCAAATGCCTCCTCAGCAGGTAAAGCTAACGCAGAAATGTCTAACTCAACAAAGGTGAAT
ATCAATAAGGCAAATTTAGAGGAGTTACAACGTATTTCGGGCATTGGTGTAAAAAGGGCTCAGGATATTCTTGAGACGAG
AGACAGTCTAGGTGGCTTTAAAACGTTAGATGATCTTAGACAGGTATCTGGAATTGGTGAAAAAACACTTGAGAAATTGA
AACATGAACTATCGTTGGACTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(77-129)

Helix-hairpin-helix motif (HHH_3)

(155-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

38.389

95.909

0.368