Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QWH96_RS06340 Genome accession   NZ_CP128987
Coordinates   1242648..1244432 (-) Length   594 a.a.
NCBI ID   WP_015017082.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1237648..1249432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS06325 (QWH96_06325) pepV 1238435..1239844 (-) 1410 WP_049519362.1 dipeptidase PepV -
  QWH96_RS06330 (QWH96_06330) - 1240022..1240624 (-) 603 WP_003054310.1 nitroreductase family protein -
  QWH96_RS06335 (QWH96_06335) - 1240937..1242586 (+) 1650 Protein_1209 thiamine pyrophosphate-dependent enzyme -
  QWH96_RS06340 (QWH96_06340) uvrC 1242648..1244432 (-) 1785 WP_015017082.1 excinuclease ABC subunit UvrC Machinery gene
  QWH96_RS06345 (QWH96_06345) - 1244562..1244711 (-) 150 WP_042357931.1 HAD hydrolase family protein -
  QWH96_RS06350 (QWH96_06350) - 1244767..1246143 (-) 1377 WP_049519354.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  QWH96_RS06355 (QWH96_06355) - 1246221..1246928 (-) 708 WP_049519352.1 YjjG family noncanonical pyrimidine nucleotidase -
  QWH96_RS06360 (QWH96_06360) - 1247098..1247418 (+) 321 WP_049519350.1 metalloregulator ArsR/SmtB family transcription factor -
  QWH96_RS06365 (QWH96_06365) - 1247480..1248475 (+) 996 WP_003062154.1 permease -
  QWH96_RS06370 (QWH96_06370) - 1248485..1248742 (+) 258 WP_003051110.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 67994.69 Da        Isoelectric Point: 9.4030

>NTDB_id=776850 QWH96_RS06340 WP_015017082.1 1242648..1244432(-) (uvrC) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MNELIKHKLELLPDSPGCYLHKDKEGTIIYVGKAKNLKNRVRSYFRGSHDTKTELLVSEIADFEFIVTESNTEALLLEIN
LIQENMPKYNIKLKDDKSYPFIKITNETFPRLLITRQIKKNDGLYFGPYPDSYTANEVKKLLDRIFPFKKCKNPVNKVCF
YYHLGQCCAHTICHTGKAYWDGLVEDVKHFLNGKDDKIIDGLRAKMLAASEEMAFERAAEYRDLISGIAIMRTKQRVMSK
DLQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNEAEEDFLTYMGQFYQDKQHFIPKEVFIPEAIDEELVAAI
VPTKIIKPQRGEKKQLVALATKNARVSLQQKFDLLEKDIKKTSGAIDNLGYLLGIDKPVRIEAFDNSNIQGTSPVAAMVV
FVDGKPSKKDYRKFKIKTVVGPDDYASMREVIFRRYSRVKHEGLVAPDLIIIDGGLGQVNAAREVIEDRLGLTIPIAGLQ
KNDKHQTHELLFGKPLEVVPLPRNSEEFFLLHRIQDEVHRFAITFHRQVRSKNSFSSKLDKIPGLGPKRKQILLKHFKTM
TAIAAASPDEIHSLGIPRAVASAVHQHLTDSQQS

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=776850 QWH96_RS06340 WP_015017082.1 1242648..1244432(-) (uvrC) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGAATGAACTGATTAAACACAAGCTAGAACTCTTGCCAGATAGTCCTGGTTGCTACTTGCATAAGGACAAAGAGGGAAC
CATTATCTATGTAGGTAAAGCTAAGAATTTGAAGAACCGAGTGCGATCTTATTTTCGTGGTAGCCATGATACTAAGACAG
AATTATTGGTGTCTGAGATTGCTGATTTTGAATTTATTGTGACCGAATCAAATACTGAGGCTCTCTTGCTTGAAATCAAC
TTGATTCAAGAAAACATGCCCAAGTATAATATCAAGCTCAAAGATGACAAGTCTTATCCTTTTATCAAAATCACCAATGA
GACCTTTCCTCGCTTGCTTATTACGAGACAGATTAAGAAAAATGACGGTCTATATTTCGGGCCCTATCCAGATTCGTACA
CCGCTAACGAAGTGAAAAAATTGCTGGATCGCATTTTTCCCTTTAAGAAATGTAAAAACCCTGTCAATAAGGTCTGTTTT
TATTACCATTTAGGACAGTGTTGTGCTCATACTATCTGCCATACAGGTAAGGCTTATTGGGATGGTCTGGTAGAGGATGT
CAAACACTTTTTGAATGGTAAGGATGACAAGATTATTGATGGGCTGCGGGCAAAAATGTTAGCAGCTTCTGAAGAAATGG
CATTTGAACGTGCCGCTGAATATCGAGATTTGATTTCAGGTATTGCCATCATGCGCACCAAGCAGCGGGTGATGAGTAAG
GACTTGCAAGACAGAGATATTTTTGGCTACTTTGTTGACAAGGGCTGGATGTGCGTACAGGTTTTCTTTGTCCGTCAAGG
GAAATTAATTCAGCGGGATGTTAACCTTTTTCCTTACTATAACGAGGCAGAAGAAGATTTTTTAACCTATATGGGGCAGT
TTTATCAAGATAAACAGCATTTTATCCCCAAAGAAGTCTTTATTCCAGAAGCTATTGACGAAGAACTAGTAGCGGCCATT
GTGCCAACTAAAATCATCAAGCCTCAACGGGGTGAGAAAAAACAATTGGTGGCTTTGGCGACCAAGAATGCACGTGTTAG
CCTTCAGCAGAAATTTGATTTGTTGGAAAAAGATATTAAGAAAACTAGCGGTGCCATTGACAATCTAGGCTACTTGTTAG
GAATTGACAAGCCAGTCCGGATTGAGGCTTTTGATAATTCCAATATTCAAGGGACAAGCCCCGTAGCGGCTATGGTTGTT
TTTGTTGACGGGAAACCTAGTAAGAAAGATTATCGTAAATTTAAGATTAAAACAGTGGTGGGCCCAGATGATTATGCCAG
CATGAGGGAAGTGATTTTTCGAAGGTATAGCCGCGTTAAACATGAAGGACTGGTAGCTCCTGATTTAATCATCATTGATG
GTGGGCTAGGGCAGGTCAATGCGGCCAGAGAAGTGATTGAAGACCGACTAGGTTTAACGATTCCTATTGCGGGTTTGCAA
AAAAATGATAAGCACCAGACCCATGAATTGCTCTTTGGAAAGCCACTCGAGGTAGTCCCCTTACCCCGTAATTCAGAAGA
ATTTTTCCTCTTGCATCGCATCCAAGATGAGGTGCACCGCTTTGCGATTACTTTCCACCGACAGGTTCGCAGTAAAAATT
CATTCTCTTCGAAATTGGATAAGATTCCAGGACTAGGTCCGAAGCGCAAGCAGATACTGCTTAAACATTTTAAAACCATG
ACAGCCATTGCAGCAGCTAGTCCAGATGAGATTCATTCGTTAGGGATTCCTAGGGCGGTGGCATCAGCTGTCCATCAGCA
TCTGACAGACAGTCAGCAAAGTTAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(196-227)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

75.722

99.158

0.751
  uvrC Streptococcus pneumoniae R6

75.382

99.158

0.747
  uvrC Streptococcus pneumoniae D39

75.382

99.158

0.747