Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PK654_RS00360 Genome accession   NZ_CP116383
Coordinates   80859..81410 (-) Length   183 a.a.
NCBI ID   WP_333909650.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 75859..86410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS00330 (PK654_00330) gspL 76055..77272 (+) 1218 WP_271696958.1 type II secretion system protein GspL -
  PK654_RS00335 (PK654_00335) - 77269..77763 (+) 495 WP_271696959.1 type II secretion system protein M -
  PK654_RS00340 (PK654_00340) - 77765..78529 (+) 765 WP_271696960.1 type II secretion system protein N -
  PK654_RS00345 (PK654_00345) nudE 78712..79275 (+) 564 WP_271696961.1 ADP compounds hydrolase NudE -
  PK654_RS00350 (PK654_00350) cysQ 79279..80109 (+) 831 WP_271696962.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PK654_RS00355 (PK654_00355) nfuA 80171..80758 (-) 588 WP_271696963.1 Fe-S biogenesis protein NfuA -
  PK654_RS00360 (PK654_00360) comF 80859..81410 (-) 552 WP_333909650.1 ComF family protein Machinery gene
  PK654_RS00365 (PK654_00365) bioH 81658..82431 (+) 774 WP_271696965.1 pimeloyl-ACP methyl ester esterase BioH -
  PK654_RS00370 (PK654_00370) - 82504..82974 (+) 471 WP_271696966.1 ATP-dependent Lon protease -
  PK654_RS00375 (PK654_00375) - 83275..85584 (-) 2310 WP_271696967.1 Tex family protein -
  PK654_RS00380 (PK654_00380) - 85828..86400 (+) 573 WP_271696968.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 21009.35 Da        Isoelectric Point: 9.3099

>NTDB_id=776843 PK654_RS00360 WP_333909650.1 80859..81410(-) (comF) [Vibrio sp. SCSIO 43137]
MSSPAEQCGYCLKKPPLWQRLYCIGDYAEPLSGYVHQLKYQGKFYFAYDLSYLLAQQISQPAPLICTVPLHWRRYIARGY
NQSRVIADYLNRHLPDKTVVNNHIFKRLRATPPQQGLDKQQRLKNLAGAFVLRQVPQHSHVAIVDDVVTTGSTVRHLCKL
LLEVGVERIDIYCLCRTPEPSQA

Nucleotide


Download         Length: 552 bp        

>NTDB_id=776843 PK654_RS00360 WP_333909650.1 80859..81410(-) (comF) [Vibrio sp. SCSIO 43137]
ATGAGCAGTCCGGCTGAGCAGTGTGGATATTGCCTGAAAAAACCGCCGTTATGGCAGCGGCTTTACTGTATCGGAGACTA
CGCAGAACCTCTTTCCGGCTATGTTCATCAGCTAAAATATCAGGGAAAATTTTATTTCGCCTACGACCTCAGTTACCTGC
TGGCACAGCAGATTTCACAACCTGCGCCGTTAATCTGTACCGTCCCGCTGCACTGGAGGCGCTATATAGCAAGGGGCTAT
AATCAGAGCAGAGTGATCGCTGACTACCTTAACCGGCACTTACCCGACAAAACCGTGGTTAACAACCACATATTCAAAAG
ACTGCGGGCAACACCACCTCAGCAGGGGCTGGATAAGCAACAGAGACTCAAAAACTTAGCCGGTGCCTTTGTTCTCAGAC
AGGTACCGCAACACAGTCACGTAGCTATTGTGGACGATGTAGTCACAACAGGCAGTACAGTACGACATTTATGTAAATTG
CTGCTTGAAGTTGGCGTGGAAAGAATTGATATTTATTGCTTATGCCGGACTCCGGAACCGTCACAAGCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(131-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

59.116

98.907

0.585
  comF Vibrio campbellii strain DS40M4

53.889

98.361

0.53
  comF Haemophilus influenzae 86-028NP

38.71

100

0.393
  comF Haemophilus influenzae Rd KW20

38.172

100

0.388