Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   PH604_RS10780 Genome accession   NZ_CP116342
Coordinates   2056264..2056686 (-) Length   140 a.a.
NCBI ID   WP_272656675.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SE690.     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2051264..2061686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH604_RS10765 (PH604_10740) pilA 2052090..2053343 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  PH604_RS10770 (PH604_10745) - 2053607..2054314 (-) 708 WP_272656674.1 opacity family porin -
  PH604_RS10775 (PH604_10750) - 2054777..2055279 (-) 503 Protein_2074 pilin -
  PH604_RS10780 (PH604_10760) pilE 2056264..2056686 (-) 423 WP_272656675.1 pilin Machinery gene
  PH604_RS10785 (PH604_10765) lpxC 2056792..2057715 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  PH604_RS10795 (PH604_10775) - 2058170..2058529 (-) 360 Protein_2077 pilin -
  PH604_RS10800 (PH604_10780) - 2058569..2058910 (-) 342 Protein_2078 pilin -
  PH604_RS10805 (PH604_10785) - 2058963..2059369 (-) 407 Protein_2079 pilin -
  PH604_RS10810 (PH604_10790) - 2059486..2059929 (-) 444 Protein_2080 pilin -
  PH604_RS10815 (PH604_10795) - 2060463..2060873 (-) 411 Protein_2081 pilin -
  PH604_RS10820 (PH604_10800) - 2061479..2061604 (+) 126 Protein_2082 IS110 family transposase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15068.67 Da        Isoelectric Point: 8.4804

>NTDB_id=776782 PH604_RS10780 WP_272656675.1 2056264..2056686(-) (pilE) [Neisseria gonorrhoeae strain SE690.]
MPTDPDSRPRGNDEAILLAEGQKSAVTEYYLNNGIWPENNASAGVASASTIKGKYVKEVKVKNGVVTATMNSSNVNNEIK
DKKLSLWARRQDGSVKWFCGQPVTRTAGANNNDEVAKDAGNNAINTKHLPSTCRDTSSAE

Nucleotide


Download         Length: 423 bp        

>NTDB_id=776782 PH604_RS10780 WP_272656675.1 2056264..2056686(-) (pilE) [Neisseria gonorrhoeae strain SE690.]
GTGCCGACAGACCCGGATTCCCGCCCGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCATATGGCCGGAAAACAACGCTTCTGCCGGCGTGGCATCCGCTTCAACAATCAAAGGCA
AATATGTTAAGGAAGTTAAAGTCAAAAACGGCGTCGTCACCGCCACAATGAATTCAAGCAACGTAAACAATGAAATCAAA
GACAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGC
CGGCGCCAACAACAACGACGAAGTCGCCAAAGACGCCGGCAACAACGCCATCAACACCAAGCACCTGCCGTCAACCTGCC
GTGATACGTCATCTGCCGAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.143

100

0.721
  pilE Neisseria gonorrhoeae MS11

70

100

0.7