Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   PH604_RS10660 Genome accession   NZ_CP116342
Coordinates   2031222..2031692 (-) Length   156 a.a.
NCBI ID   WP_420800218.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SE690.     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2026222..2036692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH604_RS10645 (PH604_10620) thiC 2027643..2029544 (+) 1902 WP_272656672.1 phosphomethylpyrimidine synthase ThiC -
  PH604_RS10650 (PH604_10625) - 2030032..2030385 (-) 354 Protein_2049 pilin -
  PH604_RS10655 (PH604_10630) - 2030767..2031165 (-) 399 Protein_2050 pilin -
  PH604_RS10660 (PH604_10635) pilE 2031222..2031692 (-) 471 WP_420800218.1 pilin Machinery gene
  PH604_RS10665 (PH604_10640) - 2031717..2032100 (-) 384 Protein_2052 pilin -
  PH604_RS10670 (PH604_10645) - 2032482..2032931 (-) 450 Protein_2053 pilin -
  PH604_RS10675 (PH604_10650) - 2033423..2033788 (-) 366 Protein_2054 pilin -
  PH604_RS11970 - 2034000..2034314 (-) 315 Protein_2055 pilin -
  PH604_RS10685 (PH604_10660) - 2034312..2034626 (+) 315 Protein_2056 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17133.46 Da        Isoelectric Point: 10.5822

>NTDB_id=776780 PH604_RS10660 WP_420800218.1 2031222..2031692(-) (pilE) [Neisseria gonorrhoeae strain SE690.]
MSNTSKKSAVAGYYLNHGEWPENNTSAGVASPDKIKGKYVKEVEVKNGVVTATMASSNVNKEIKDKKLSLWARRQDGSVK
WFCGQPVKRADKANDTVADATGKDNGINTKHLPSTCRDKSSAGCTKHHLRLSIKIPKPSFPRTYIPSFPRKRESGT

Nucleotide


Download         Length: 471 bp        

>NTDB_id=776780 PH604_RS10660 WP_420800218.1 2031222..2031692(-) (pilE) [Neisseria gonorrhoeae strain SE690.]
ATTTCAAACACTTCCAAAAAATCAGCCGTTGCCGGGTATTACCTGAATCACGGCGAATGGCCGGAAAACAACACTTCTGC
CGGCGTGGCATCCCCCGACAAAATCAAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCACAA
TGGCTTCAAGCAACGTAAACAAAGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAA
TGGTTCTGCGGACAGCCGGTTAAGCGCGCCGACAAAGCCAACGACACCGTTGCCGACGCCACCGGCAAAGACAACGGCAT
CAACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATCTGCCGGTTGCACGAAACACCACCTACGGCTTTCTATAA
AAATACCTAAACCGTCATTCCCACGAACCTACATCCCGTCATTCCCACGAAAGCGGGAATCCGGAACGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

78.814

75.641

0.596
  pilE Neisseria gonorrhoeae strain FA1090

73.504

75

0.551