Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   PH604_RS09875 Genome accession   NZ_CP116342
Coordinates   1885984..1886379 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SE690.     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1880984..1891379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH604_RS09855 (PH604_09830) rfbC 1881061..1881618 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  PH604_RS09860 (PH604_09835) - 1881662..1883680 (-) 2019 WP_003690172.1 OPT family oligopeptide transporter -
  PH604_RS09865 (PH604_09840) dnaJ 1883875..1884996 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  PH604_RS09870 (PH604_09845) - 1885130..1885459 (+) 330 Protein_1903 transposase -
  PH604_RS09875 (PH604_09850) comE 1885984..1886379 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  PH604_RS09880 (PH604_09855) - 1886484..1886600 (-) 117 Protein_1905 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=776775 PH604_RS09875 WP_003703428.1 1885984..1886379(-) (comE) [Neisseria gonorrhoeae strain SE690.]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=776775 PH604_RS09875 WP_003703428.1 1885984..1886379(-) (comE) [Neisseria gonorrhoeae strain SE690.]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1