Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PJ259_RS10430 Genome accession   NZ_CP116340
Coordinates   2244784..2245419 (-) Length   211 a.a.
NCBI ID   WP_059315847.1    Uniprot ID   A0AAX3L304
Organism   Pseudomonas sp. JBR1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2239784..2250419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ259_RS10395 (PJ259_10395) petA 2240321..2240899 (-) 579 WP_271655692.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  PJ259_RS10400 (PJ259_10400) murB 2240896..2241918 (-) 1023 WP_271655693.1 UDP-N-acetylmuramate dehydrogenase -
  PJ259_RS10405 (PJ259_10405) - 2241908..2242375 (-) 468 WP_271655863.1 low molecular weight protein-tyrosine-phosphatase -
  PJ259_RS10410 (PJ259_10410) kdsB 2242382..2243146 (-) 765 WP_271655694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PJ259_RS10415 (PJ259_10415) - 2243143..2243328 (-) 186 WP_059232294.1 Trm112 family protein -
  PJ259_RS10420 (PJ259_10420) lpxK 2243343..2244350 (-) 1008 WP_271655695.1 tetraacyldisaccharide 4'-kinase -
  PJ259_RS10425 (PJ259_10425) - 2244347..2244787 (-) 441 WP_271655696.1 biopolymer transporter ExbD -
  PJ259_RS10430 (PJ259_10430) exbB 2244784..2245419 (-) 636 WP_059315847.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PJ259_RS10435 (PJ259_10435) comA 2245468..2247708 (-) 2241 WP_271655697.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PJ259_RS10440 (PJ259_10440) - 2247820..2249061 (-) 1242 WP_059315849.1 lipoprotein-releasing ABC transporter permease subunit -
  PJ259_RS10445 (PJ259_10445) lolD 2249069..2249770 (-) 702 WP_026083696.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23065.12 Da        Isoelectric Point: 6.8860

>NTDB_id=776676 PJ259_RS10430 WP_059315847.1 2244784..2245419(-) (exbB) [Pseudomonas sp. JBR1]
MFEMVKAGGWMMLPIILSSILATAIIAERLWTLRRSRVAPPTLLAQVWRWIQDKQLNAERLRELRAGSPLGDILAAGLTN
SRHGRDIMKEAIEEAGSRVVHDLERYLNTLGSIAALAPLMGLLGTVFGMIDIFSAFMNDGMANAPILAGGISKALVTTAT
GLLVAIPAVFFHRYLLRRVDELVVGMEQEAVKLVDILHGDREVDVREGAPA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=776676 PJ259_RS10430 WP_059315847.1 2244784..2245419(-) (exbB) [Pseudomonas sp. JBR1]
GTGTTCGAAATGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATCCTCAGTTCCATCCTGGCCACGGCCATCATCGC
CGAGCGGCTGTGGACCCTCAGGCGCAGCCGGGTCGCACCACCCACACTGCTCGCCCAGGTCTGGCGCTGGATCCAGGACA
AGCAGCTCAACGCCGAACGGCTGCGCGAACTGCGCGCCGGATCGCCCCTGGGCGACATCCTCGCTGCGGGCCTGACCAAT
TCCCGCCATGGTCGCGACATCATGAAGGAGGCCATCGAGGAAGCCGGCAGCCGCGTGGTGCATGACCTAGAGCGCTATCT
CAATACCCTCGGCAGCATCGCCGCGCTGGCGCCGCTGATGGGTCTGCTGGGCACGGTGTTCGGCATGATCGACATCTTCA
GCGCCTTCATGAACGACGGCATGGCCAATGCGCCCATTCTCGCCGGCGGTATCTCCAAGGCGCTGGTCACCACCGCCACC
GGTCTGCTGGTGGCGATTCCCGCGGTGTTCTTCCATCGCTATCTGCTGCGTCGCGTCGACGAGCTGGTGGTGGGCATGGA
ACAGGAAGCGGTCAAGCTGGTGGACATCCTCCATGGCGATCGCGAGGTGGACGTGCGCGAAGGAGCCCCGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

75

98.578

0.739