Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QVM91_RS16800 Genome accession   NZ_CP128970
Coordinates   3417749..3418378 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TUM1886     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3412749..3423378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVM91_RS16785 (QVM91_16785) helD 3412991..3415045 (-) 2055 WP_001595613.1 DNA helicase IV -
  QVM91_RS16790 (QVM91_16790) yccF 3415168..3415614 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QVM91_RS16795 (QVM91_16795) yccS 3415624..3417786 (+) 2163 WP_001550920.1 YccS family putative transporter -
  QVM91_RS16800 (QVM91_16800) sxy/tfoX 3417749..3418378 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QVM91_RS16805 (QVM91_16805) sulA 3418597..3419106 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  QVM91_RS16810 (QVM91_16810) ompA 3419463..3420515 (+) 1053 WP_000750418.1 porin OmpA -
  QVM91_RS16815 (QVM91_16815) matP 3420590..3421042 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QVM91_RS16820 (QVM91_16820) ycbZ 3421228..3422988 (+) 1761 WP_045145322.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=776677 QVM91_RS16800 WP_000839153.1 3417749..3418378(-) (sxy/tfoX) [Escherichia coli strain TUM1886]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=776677 QVM91_RS16800 WP_000839153.1 3417749..3418378(-) (sxy/tfoX) [Escherichia coli strain TUM1886]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1