Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PJW05_RS11545 Genome accession   NZ_CP116304
Coordinates   2512462..2513097 (+) Length   211 a.a.
NCBI ID   WP_271411834.1    Uniprot ID   -
Organism   Pseudomonas sp. Q1-7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2507462..2518097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW05_RS11525 lolD 2507485..2508168 (+) 684 WP_271411830.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PJW05_RS11530 - 2508170..2509414 (+) 1245 WP_271411831.1 lipoprotein-releasing ABC transporter permease subunit -
  PJW05_RS11535 - 2509464..2509991 (-) 528 WP_271411832.1 DUF2062 domain-containing protein -
  PJW05_RS11540 comA 2510165..2512390 (+) 2226 WP_271411833.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PJW05_RS11545 exbB 2512462..2513097 (+) 636 WP_271411834.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PJW05_RS11550 - 2513094..2513540 (+) 447 WP_271411835.1 biopolymer transporter ExbD -
  PJW05_RS11555 lpxK 2513540..2514544 (+) 1005 WP_271411836.1 tetraacyldisaccharide 4'-kinase -
  PJW05_RS11560 - 2514584..2514769 (+) 186 WP_077525327.1 Trm112 family protein -
  PJW05_RS11565 kdsB 2514766..2515530 (+) 765 WP_271411837.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PJW05_RS11570 - 2515530..2515994 (+) 465 WP_271411838.1 low molecular weight protein-tyrosine-phosphatase -
  PJW05_RS11575 murB 2515991..2517010 (+) 1020 WP_271411839.1 UDP-N-acetylmuramate dehydrogenase -
  PJW05_RS11580 - 2517066..2517347 (-) 282 WP_271411840.1 pyrimidine/purine nucleoside phosphorylase -
  PJW05_RS11585 - 2517425..2517967 (-) 543 WP_271411841.1 exonuclease domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.13 Da        Isoelectric Point: 6.8677

>NTDB_id=776509 PJW05_RS11545 WP_271411834.1 2512462..2513097(+) (exbB) [Pseudomonas sp. Q1-7]
MWELVKAGGWMMLPIVLCSIAATAIIAERLWTLRLSRVSPPHLLGQVWRQIKDKQLNGQKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIEIFSGFMDNGMANAPVLAGGIAKALVTTAA
GLVVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEVVQGDREVDFAEEAKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=776509 PJW05_RS11545 WP_271411834.1 2512462..2513097(+) (exbB) [Pseudomonas sp. Q1-7]
GTGTGGGAGTTGGTCAAAGCCGGTGGCTGGATGATGCTGCCGATCGTTCTGTGTTCCATCGCCGCCACCGCCATCATTGC
TGAACGCCTGTGGACCCTGCGCCTCAGCCGGGTCTCGCCGCCGCATCTGCTGGGCCAGGTCTGGCGCCAGATCAAGGACA
AGCAATTGAATGGCCAGAAGCTCAAGGAGCTGCGTGCCTCCTCCCCCCTGGGGGAAGTGTTGGCGGCAGGGCTGGCCAAT
TCCAAGCATGGCCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCAGCCGGGTCATCCATGAGCTGGAACGCTACCT
CAATGCTTTGGGTACCATCGCTGCCATGGCGCCGTTGCTGGGCCTGCTGGGCACGGTATTCGGCATGATCGAAATCTTCA
GCGGCTTCATGGACAACGGCATGGCCAACGCGCCGGTGCTCGCCGGCGGTATCGCCAAAGCCCTGGTGACCACGGCCGCC
GGCCTGGTCGTGGCTATTCCGGCGGTGTTCTTCCATCGTTACCTGCTGCGCCGTGTCGACGAGTTGGTGGTCGCCATGGA
ACAGGAAGCGATCAAGCTGGTGGAAGTGGTCCAGGGCGACCGCGAGGTCGACTTCGCAGAGGAAGCCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.575

98.104

0.82