Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PJW05_RS05415 Genome accession   NZ_CP116304
Coordinates   1175834..1177435 (-) Length   533 a.a.
NCBI ID   WP_271410713.1    Uniprot ID   -
Organism   Pseudomonas sp. Q1-7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1170834..1182435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW05_RS05395 pilV 1171545..1172129 (-) 585 WP_271410710.1 type IV pilus modification protein PilV -
  PJW05_RS05400 - 1172139..1172651 (-) 513 WP_271410711.1 GspH/FimT family protein -
  PJW05_RS05405 thiO 1173375..1174472 (+) 1098 WP_271412172.1 glycine oxidase ThiO -
  PJW05_RS05410 pilR 1174494..1175831 (-) 1338 WP_271410712.1 sigma-54 dependent transcriptional regulator Regulator
  PJW05_RS05415 pilS 1175834..1177435 (-) 1602 WP_271410713.1 ATP-binding protein Regulator
  PJW05_RS05420 - 1177425..1177661 (-) 237 WP_271412173.1 PP0621 family protein -
  PJW05_RS05425 - 1177834..1179465 (+) 1632 WP_271410714.1 NAD+ synthase -
  PJW05_RS05430 - 1179575..1180594 (-) 1020 WP_271410715.1 outer membrane protein assembly factor BamD -
  PJW05_RS05435 rluD 1180742..1181716 (+) 975 WP_271410716.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 59063.05 Da        Isoelectric Point: 8.3632

>NTDB_id=776502 PJW05_RS05415 WP_271410713.1 1175834..1177435(-) (pilS) [Pseudomonas sp. Q1-7]
MSADSLSAPGALSAQGRRIFRLYSLYRLVIGLTLVMLISSELDDHLLELARPELFRNASWFYLILNALIATLVPRPRTMV
QVFSLALVDVLLLSCLFFAAGGTPSGIANLIVVSVAISNILLRGRVGLLVAAVAAIGLIYLTFYLSITHPRATSQFVQAG
GFGALCFAAALFIQGISRRLQLSENLAEQRAAEVANLEALNAQILQRMRTGILVLDPQNYILLTNNGAQAMLGKDKLQGR
PLAPHCPELLESLQQWLANPTLRPQSIQSSSNSPTLQPSFVHLQHGDQQNTLVFLEDISQIAQQAQQLKLAALGRLTAGI
AHEIRNPLGAISHAAQLLQESEDLLGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLTRFASEFRAAS
GDSQTLHLNTLGSTLHTRMDPHQLTQVLTNLVQNGLRYSAKKHPRGQVWLRLFRDAESDLPVLEVEDDGEGVPPEQVHHI
FEPFFTTESKGTGLGLYISRELCESNQARLDYKPREQGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=776502 PJW05_RS05415 WP_271410713.1 1175834..1177435(-) (pilS) [Pseudomonas sp. Q1-7]
GTGAGCGCTGATAGCCTTTCCGCCCCCGGCGCGCTGAGCGCCCAGGGGCGGCGCATCTTCCGCCTCTATAGCCTGTATCG
GCTGGTGATCGGCCTGACCCTGGTGATGCTGATCTCCAGTGAGCTGGACGACCACCTGCTGGAACTGGCGCGTCCGGAAT
TGTTCCGCAACGCCAGCTGGTTCTACCTGATCCTCAACGCCCTGATCGCCACCCTGGTGCCGCGCCCTCGCACCATGGTC
CAGGTGTTCAGCCTCGCGCTGGTGGACGTCCTGCTGCTGTCCTGCCTGTTCTTCGCGGCGGGCGGCACGCCCAGCGGTAT
CGCCAACCTGATCGTGGTGTCGGTGGCCATCTCCAACATCCTGTTGCGCGGGCGCGTTGGCCTGCTGGTCGCAGCGGTGG
CGGCGATCGGATTGATCTACCTGACCTTCTACCTCAGCATCACACACCCCCGGGCGACCAGCCAGTTCGTCCAAGCCGGT
GGGTTCGGCGCCCTGTGCTTCGCCGCGGCACTGTTCATCCAAGGCATCAGCCGACGCCTGCAGCTCAGCGAAAACCTCGC
CGAACAGCGTGCCGCCGAGGTGGCGAACCTGGAAGCCCTGAATGCGCAGATCCTCCAGCGCATGCGCACGGGCATCCTGG
TGCTGGACCCGCAGAACTACATCCTGCTGACCAACAACGGCGCGCAGGCCATGCTGGGCAAGGACAAGCTTCAGGGCCGG
CCCTTGGCGCCCCACTGCCCGGAGCTCCTGGAAAGCCTGCAGCAGTGGCTCGCCAACCCGACGCTGCGACCGCAGAGCAT
CCAGTCCTCCAGCAACAGCCCTACGCTGCAGCCCAGCTTCGTCCACCTGCAGCACGGCGACCAGCAGAACACCCTGGTCT
TCCTCGAAGACATTTCGCAGATCGCCCAGCAGGCACAGCAGCTCAAACTTGCCGCCCTGGGCCGCCTTACCGCCGGCATC
GCCCACGAGATCCGCAATCCGCTGGGCGCCATCAGCCACGCCGCCCAGCTCCTGCAGGAATCGGAAGACCTGCTAGGCCC
CGACCGACGCCTGGCGCAGATCATCCAGGATCACTCGCGGCGCATGAACCTGGTGATCGAGAACGTGCTCCAGCTGTCCC
GCCGGCGCCAGTCGGAGCCCCAGTTGCTGGACCTCAAGTACTGGCTGACCCGGTTCGCCAGCGAGTTCCGCGCCGCCTCC
GGCGACAGTCAGACCCTGCACCTGAACACCCTCGGCAGCACGCTCCATACCCGCATGGACCCGCACCAGTTGACCCAGGT
GCTGACCAATCTGGTGCAGAACGGCCTGCGCTACAGCGCCAAGAAGCACCCCCGGGGCCAGGTCTGGCTCAGGCTCTTCC
GGGACGCCGAAAGCGACTTGCCGGTACTGGAAGTGGAAGACGACGGAGAAGGCGTCCCGCCCGAACAGGTACACCATATC
TTCGAACCCTTCTTCACCACTGAAAGCAAAGGCACCGGTCTCGGCCTGTACATTTCCCGCGAACTCTGCGAGAGCAACCA
GGCCCGCCTCGACTACAAACCACGCGAGCAGGGCGGCAGTTGCTTCCGCATCACCTTCGCCCACCCGCGCAAACTGAGCT
GA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-376)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(420-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.703

97.373

0.64