Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PJW05_RS05410 Genome accession   NZ_CP116304
Coordinates   1174494..1175831 (-) Length   445 a.a.
NCBI ID   WP_271410712.1    Uniprot ID   -
Organism   Pseudomonas sp. Q1-7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1165614..1174472 1174494..1175831 flank 22


Gene organization within MGE regions


Location: 1165614..1175831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW05_RS05375 - 1165614..1169891 (-) 4278 WP_271410706.1 PilC/PilY family type IV pilus protein -
  PJW05_RS05380 - 1169901..1170212 (-) 312 WP_271410707.1 hypothetical protein -
  PJW05_RS05385 - 1170224..1170721 (-) 498 WP_271410708.1 PilX N-terminal domain-containing pilus assembly protein -
  PJW05_RS05390 - 1170731..1171540 (-) 810 WP_271410709.1 PilW family protein -
  PJW05_RS05395 pilV 1171545..1172129 (-) 585 WP_271410710.1 type IV pilus modification protein PilV -
  PJW05_RS05400 - 1172139..1172651 (-) 513 WP_271410711.1 GspH/FimT family protein -
  PJW05_RS05405 thiO 1173375..1174472 (+) 1098 WP_271412172.1 glycine oxidase ThiO -
  PJW05_RS05410 pilR 1174494..1175831 (-) 1338 WP_271410712.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49652.99 Da        Isoelectric Point: 5.3151

>NTDB_id=776501 PJW05_RS05410 WP_271410712.1 1174494..1175831(-) (pilR) [Pseudomonas sp. Q1-7]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNLKEAREWLAREPFDLCLTDMRLPDGTGLDLVQYIQQRHPMVPVAM
ITAYGSLDTAVNALKAGAFDFLTKPVDLGRLRELVGTALRLSAPEDGEPPVDGRLLGNSPPMTTLRKQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRAERPFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHKDLAAEVAADRFRQDLYYRLNVIELSVPPLRERREDIPLLADTM
LKRLAQQSGLPAASLSAEALDKLKCYRFPGNVRELENMLERAYTLCEDDQIQARDLRLAEAAGASETGEANLAQIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=776501 PJW05_RS05410 WP_271410712.1 1174494..1175831(-) (pilR) [Pseudomonas sp. Q1-7]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTGCTGGAGATCACCCTCGGCCGGATGAA
GCTCGACACCCGCAGCGCCCGCAACCTCAAGGAAGCCCGCGAGTGGCTGGCGCGCGAACCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGATCTGGTGCAGTACATCCAGCAGCGCCACCCCATGGTGCCGGTGGCGATG
ATCACCGCCTACGGCAGCCTCGACACCGCGGTAAACGCCCTCAAGGCAGGCGCCTTCGACTTCCTCACCAAACCGGTGGA
CCTGGGCCGCCTGCGCGAACTGGTCGGCACTGCGCTGCGCCTGAGCGCGCCGGAAGACGGCGAACCGCCGGTGGACGGCC
GCCTGCTGGGCAACTCGCCGCCCATGACCACCCTCCGCAAGCAGATCCAGAAACTCGCCCGCAGCCAGGCCCCCGTCTAT
ATCAGCGGTGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAACAAGGCCCCCGTGCCGAGCGTCCCTT
CGTGCCGGTCAACTGCGGTGCCATTCCGTCCGAGTTGATGGAAAGCGAGTTTTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCGGTGGAAGACAAGCAGGGCCTGTTCCAGGCTGCGAACGGCGGCACCCTGTTCCTCGATGAAGTGGCCGACCTGCCG
CTGCCGATGCAGGTGAAGCTACTGCGCGCCATCCAGGAGAAAGCCGTGCGCGCCGTCGGCGGCCAGCAGGAAGTGGTGGT
GGACGTGCGCATCCTCAGTGCTACCCACAAGGACCTGGCGGCGGAAGTGGCCGCCGACCGGTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTGATCGAACTCAGCGTGCCGCCGCTGCGCGAACGCCGCGAAGACATTCCGCTGCTGGCCGACACCATG
CTCAAGCGCCTGGCCCAGCAGAGTGGGCTGCCGGCCGCCAGCCTCTCCGCCGAAGCCCTGGACAAGCTCAAGTGCTATCG
CTTCCCGGGCAACGTGCGGGAATTGGAGAACATGCTCGAACGGGCCTACACCCTGTGCGAGGACGACCAGATCCAGGCCC
GCGACCTGCGCCTGGCCGAAGCCGCCGGCGCCTCCGAAACGGGCGAGGCCAACCTGGCGCAGATCGACAACCTGGAAGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAAGCGCTGGAAGAAACCCGCTGGAATCGTACGGCGGCGGCTCAGCG
CCTGGGGCTGACCTTCCGCTCCATGCGTTATCGCCTGAAGAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

87.865

100

0.879
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515