Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   PHA49_RS05390 Genome accession   NZ_CP116234
Coordinates   1132584..1132988 (-) Length   134 a.a.
NCBI ID   WP_271330495.1    Uniprot ID   -
Organism   Helicobacter pylori strain H390d     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127584..1137988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA49_RS05345 (PHA49_05345) - 1127642..1128748 (-) 1107 WP_271330490.1 hypothetical protein -
  PHA49_RS05350 (PHA49_05350) - 1128738..1129523 (-) 786 WP_271330491.1 hypothetical protein -
  PHA49_RS05355 (PHA49_05355) - 1129523..1129909 (-) 387 WP_271331162.1 DUF1294 domain-containing protein -
  PHA49_RS05360 (PHA49_05360) - 1130245..1130406 (-) 162 WP_229763027.1 lysozyme -
  PHA49_RS05365 (PHA49_05365) - 1130426..1130671 (-) 246 WP_271330492.1 lysozyme -
  PHA49_RS05370 (PHA49_05370) - 1130721..1130903 (-) 183 WP_271330493.1 lysozyme -
  PHA49_RS05375 (PHA49_05375) - 1130914..1131474 (-) 561 WP_088357200.1 hypothetical protein -
  PHA49_RS05380 (PHA49_05380) - 1131458..1131796 (-) 339 WP_000699911.1 hypothetical protein -
  PHA49_RS05385 (PHA49_05385) - 1131980..1132468 (-) 489 WP_271330494.1 tetratricopeptide repeat protein -
  PHA49_RS05390 (PHA49_05390) dprB 1132584..1132988 (-) 405 WP_271330495.1 Holliday junction resolvase RuvX Machinery gene
  PHA49_RS05395 (PHA49_05395) dprA 1132985..1133785 (-) 801 WP_271330496.1 DNA-processing protein DprA Machinery gene
  PHA49_RS05400 (PHA49_05400) minE 1133797..1134030 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  PHA49_RS05405 (PHA49_05405) minD 1134027..1134833 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  PHA49_RS05410 (PHA49_05410) ilvC 1134857..1135849 (-) 993 WP_271330497.1 ketol-acid reductoisomerase -
  PHA49_RS05420 (PHA49_05420) - 1136097..1136879 (+) 783 WP_271330498.1 NAD+ synthase -
  PHA49_RS05425 (PHA49_05425) - 1136876..1137814 (+) 939 WP_271330499.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15267.72 Da        Isoelectric Point: 8.2748

>NTDB_id=776263 PHA49_RS05390 WP_271330495.1 1132584..1132988(-) (dprB) [Helicobacter pylori strain H390d]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKDKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=776263 PHA49_RS05390 WP_271330495.1 1132584..1132988(-) (dprB) [Helicobacter pylori strain H390d]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TTGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAGACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955