Detailed information NTG0776253

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: PHA49_RS00700
• Genome accession: NZ_CP116234
• Coordinates: 152859..153914 (+)
• Length: 351 a.a.
• NCBI ID: WP_271330817.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain H390d
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147859..158914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PHA49_RS00670 (PHA49_00670)	-	148286..148699 (+)	414	WP_001023005.1	universal stress protein	-
PHA49_RS00675 (PHA49_00675)	-	148719..148994 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
PHA49_RS00680 (PHA49_00680)	-	148994..151216 (+)	2223	WP_271330814.1	AAA family ATPase	-
PHA49_RS00685 (PHA49_00685)	panD	151206..151562 (+)	357	WP_271330815.1	aspartate 1-decarboxylase	-
PHA49_RS00690 (PHA49_00690)	-	151565..151858 (+)	294	WP_271330816.1	YbaB/EbfC family nucleoid-associated protein	-
PHA49_RS00695 (PHA49_00695)	-	151858..152853 (+)	996	WP_271331139.1	PDZ domain-containing protein	-
PHA49_RS00700 (PHA49_00700)	comB6	152859..153914 (+)	1056	WP_271330817.1	P-type conjugative transfer protein TrbL	Machinery gene
PHA49_RS00705 (PHA49_00705)	comB7	153930..154055 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
PHA49_RS00710 (PHA49_00710)	comB8	154052..154795 (+)	744	WP_000660533.1	type IV secretion system protein	Machinery gene
PHA49_RS00715 (PHA49_00715)	comB9	154795..155757 (+)	963	WP_271330818.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
PHA49_RS00720 (PHA49_00720)	comB10	155750..156886 (+)	1137	WP_271330819.1	DNA type IV secretion system protein ComB10	Machinery gene
PHA49_RS00725 (PHA49_00725)	-	156956..158368 (+)	1413	WP_271330820.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39917.90 Da
• Isoelectric Point: 8.8165

>NTDB_id=776253 PHA49_RS00700 WP_271330817.1 152859..153914(+) (comB6) [Helicobacter pylori strain H390d]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHVLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHIQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPVSSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=776253 PHA49_RS00700 WP_271330817.1 152859..153914(+) (comB6) [Helicobacter pylori strain H390d]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACCAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGTGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATACAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAGCTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGTTTCTTCCCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAGAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.726	100	0.957