Detailed information NTG0776256

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: PHA49_RS00715
• Genome accession: NZ_CP116234
• Coordinates: 154795..155757 (+)
• Length: 320 a.a.
• NCBI ID: WP_271330818.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain H390d
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 149795..160757

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PHA49_RS00685 (PHA49_00685)	panD	151206..151562 (+)	357	WP_271330815.1	aspartate 1-decarboxylase	-
PHA49_RS00690 (PHA49_00690)	-	151565..151858 (+)	294	WP_271330816.1	YbaB/EbfC family nucleoid-associated protein	-
PHA49_RS00695 (PHA49_00695)	-	151858..152853 (+)	996	WP_271331139.1	PDZ domain-containing protein	-
PHA49_RS00700 (PHA49_00700)	comB6	152859..153914 (+)	1056	WP_271330817.1	P-type conjugative transfer protein TrbL	Machinery gene
PHA49_RS00705 (PHA49_00705)	comB7	153930..154055 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
PHA49_RS00710 (PHA49_00710)	comB8	154052..154795 (+)	744	WP_000660533.1	type IV secretion system protein	Machinery gene
PHA49_RS00715 (PHA49_00715)	comB9	154795..155757 (+)	963	WP_271330818.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
PHA49_RS00720 (PHA49_00720)	comB10	155750..156886 (+)	1137	WP_271330819.1	DNA type IV secretion system protein ComB10	Machinery gene
PHA49_RS00725 (PHA49_00725)	-	156956..158368 (+)	1413	WP_271330820.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
PHA49_RS00730 (PHA49_00730)	gmd	158383..159528 (+)	1146	WP_271330821.1	GDP-mannose 4,6-dehydratase	-
PHA49_RS00735 (PHA49_00735)	-	159521..160453 (+)	933	WP_271330822.1	GDP-L-fucose synthase family protein	-
PHA49_RS00740 (PHA49_00740)	-	160524..160679 (-)	156	WP_271330823.1	hypothetical protein	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36835.45 Da
• Isoelectric Point: 9.3756

>NTDB_id=776256 PHA49_RS00715 WP_271330818.1 154795..155757(+) (comB9) [Helicobacter pylori strain H390d]
MRKVLCTLVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=776256 PHA49_RS00715 WP_271330818.1 154795..155757(+) (comB9) [Helicobacter pylori strain H390d]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGATAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTGGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938