Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | PHA49_RS00290 | Genome accession | NZ_CP116234 |
| Coordinates | 64342..64917 (+) | Length | 191 a.a. |
| NCBI ID | WP_271330774.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain H390d | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 59342..69917
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA49_RS00265 (PHA49_00265) | uvrD | 60033..62078 (+) | 2046 | WP_271330770.1 | DNA helicase UvrD | - |
| PHA49_RS00270 (PHA49_00270) | flgA | 62075..62731 (+) | 657 | WP_271330771.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| PHA49_RS00275 (PHA49_00275) | - | 62741..63304 (+) | 564 | WP_271330772.1 | UbiX family flavin prenyltransferase | - |
| PHA49_RS00280 (PHA49_00280) | coaD | 63304..63777 (+) | 474 | WP_154427843.1 | pantetheine-phosphate adenylyltransferase | - |
| PHA49_RS00285 (PHA49_00285) | tmk | 63779..64354 (+) | 576 | WP_271330773.1 | dTMP kinase | - |
| PHA49_RS00290 (PHA49_00290) | comFC | 64342..64917 (+) | 576 | WP_271330774.1 | ComF family protein | Machinery gene |
| PHA49_RS00295 (PHA49_00295) | - | 64950..66989 (+) | 2040 | WP_271330775.1 | HsdM family class I SAM-dependent methyltransferase | - |
| PHA49_RS07590 | - | 66986..67621 (+) | 636 | WP_333781769.1 | restriction endonuclease subunit S | - |
| PHA49_RS07595 | - | 67648..68190 (+) | 543 | WP_231212853.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21379.01 Da Isoelectric Point: 9.0940
>NTDB_id=776252 PHA49_RS00290 WP_271330774.1 64342..64917(+) (comFC) [Helicobacter pylori strain H390d]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRTNNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKILNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRTNNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKILNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=776252 PHA49_RS00290 WP_271330774.1 64342..64917(+) (comFC) [Helicobacter pylori strain H390d]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGTTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAATCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGTTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAATCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |