Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QVN13_RS06805 Genome accession   NZ_CP128907
Coordinates   1404187..1404924 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain TUM13881     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1399187..1409924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN13_RS06790 (QVN13_06790) clpC 1399641..1402214 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  QVN13_RS06795 (QVN13_06795) yfiH 1402344..1403075 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  QVN13_RS06800 (QVN13_06800) rluD 1403072..1404052 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QVN13_RS06805 (QVN13_06805) comL 1404187..1404924 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QVN13_RS06810 (QVN13_06810) raiA 1405194..1405535 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QVN13_RS06815 (QVN13_06815) pheL 1405639..1405686 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QVN13_RS06820 (QVN13_06820) pheA 1405785..1406945 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  QVN13_RS06825 (QVN13_06825) tyrA 1406988..1408109 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QVN13_RS06830 (QVN13_06830) aroF 1408120..1409190 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QVN13_RS06835 (QVN13_06835) yfiL 1409400..1409765 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=775658 QVN13_RS06805 WP_000197686.1 1404187..1404924(+) (comL) [Escherichia coli strain TUM13881]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=775658 QVN13_RS06805 WP_000197686.1 1404187..1404924(+) (comL) [Escherichia coli strain TUM13881]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376