Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QVN08_RS05745 Genome accession   NZ_CP128888
Coordinates   1184678..1186339 (-) Length   553 a.a.
NCBI ID   WP_000880919.1    Uniprot ID   -
Organism   Escherichia coli strain TUM14697     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1179678..1191339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN08_RS05715 (QVN08_05715) - 1180804..1181994 (-) 1191 WP_085437551.1 integrase domain-containing protein -
  QVN08_RS05725 (QVN08_05725) smpB 1182756..1183238 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  QVN08_RS05730 (QVN08_05730) ratA 1183409..1183846 (+) 438 WP_001339419.1 type II toxin-antitoxin system toxin RatA -
  QVN08_RS05735 (QVN08_05735) yfjF 1183836..1184126 (+) 291 WP_001117833.1 RnfH family protein -
  QVN08_RS05740 (QVN08_05740) bamE 1184188..1184529 (-) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  QVN08_RS05745 (QVN08_05745) recN 1184678..1186339 (-) 1662 WP_000880919.1 DNA repair protein RecN Machinery gene
  QVN08_RS05750 (QVN08_05750) nadK 1186425..1187303 (-) 879 WP_001059176.1 NAD(+) kinase -
  QVN08_RS05755 (QVN08_05755) grpE 1187426..1188019 (+) 594 WP_001296310.1 nucleotide exchange factor GrpE -
  QVN08_RS05760 (QVN08_05760) yfjD 1188073..1189359 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  QVN08_RS05765 (QVN08_05765) ypjD 1189380..1190171 (-) 792 WP_001314062.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61423.39 Da        Isoelectric Point: 5.3388

>NTDB_id=775583 QVN08_RS05745 WP_000880919.1 1184678..1186339(-) (recN) [Escherichia coli strain TUM14697]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQDDSQETLALAVTKHHQQALETARALHQQRQHYANELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=775583 QVN08_RS05745 WP_000880919.1 1184678..1186339(-) (recN) [Escherichia coli strain TUM14697]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAAT
AACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACA
TGGTGCGTACCGGCGCTGCTCGTGCCGACCTGTGCGCTCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGTTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCCCGTGGTTTCAT
CAACGGTACAGCTGTTCCTCTGTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AGTTACTCACCAAACCCGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTGCTCCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGTGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGCGCCGCTCGTGC
GGAGCTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCTGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCTGACGGTGAAGACGCA
AATCTGCAAAGTCAACTTTACACGGCTAAACAACTGGTGAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAGGCTACCATCCAGATTGCTGAAGCCAGTGATGAACTACGCCACTACTGCGATCGTCTGGATCTCG
ATCCCAACCGACTGTTTGAACTTGAACAGCGCATCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGACGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTGGAAACGGCGCGCGCGTTACACCAGCAACGCCAGCATTATGCAAATG
AGTTGGCACAGCTGATCACCGATAGTATGCATGCACTCTCTATGCCACATGGGCAGTTTACGATCGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGCGCTGATCGTATTGAGTTTCGGGTAACCACCAACCCAGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAGTTGTCCCGCATCGCATTGGCAATCCAGGTCATTACCGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGCCCAACAGCGGCAGTTGTCGGCAAACTGCTACGTCAACTT
GGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGGATAAAAAAGCGCGGTTACAAGAGTTGGCGCGCCTGC
TTGGTGGCAGTGAAGTCACACGTAACACACTGGCGAATGCGAAAGAACTGCTTGCGGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.794

100

0.378
  recN Bacillus subtilis subsp. subtilis str. 168

34.904

100

0.362