Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QVN10_RS09445 Genome accession   NZ_CP128875
Coordinates   1978260..1978997 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain TUM14771     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1973260..1983997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN10_RS09430 (QVN10_09430) clpC 1973714..1976287 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  QVN10_RS09435 (QVN10_09435) yfiH 1976417..1977148 (-) 732 WP_000040140.1 purine nucleoside phosphorylase YfiH -
  QVN10_RS09440 (QVN10_09440) rluD 1977145..1978125 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QVN10_RS09445 (QVN10_09445) comL 1978260..1978997 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QVN10_RS09450 (QVN10_09450) raiA 1979268..1979609 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QVN10_RS09455 (QVN10_09455) pheL 1979713..1979760 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QVN10_RS09460 (QVN10_09460) pheA 1979859..1981019 (+) 1161 WP_000200138.1 bifunctional chorismate mutase/prephenate dehydratase -
  QVN10_RS09465 (QVN10_09465) tyrA 1981062..1982183 (-) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QVN10_RS09470 (QVN10_09470) aroF 1982194..1983264 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QVN10_RS09475 (QVN10_09475) yfiL 1983474..1983839 (+) 366 WP_001314943.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=775415 QVN10_RS09445 WP_000197686.1 1978260..1978997(+) (comL) [Escherichia coli strain TUM14771]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=775415 QVN10_RS09445 WP_000197686.1 1978260..1978997(+) (comL) [Escherichia coli strain TUM14771]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376