Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QU579_RS12745 Genome accession   NZ_CP128803
Coordinates   2773329..2774057 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2768329..2779057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS12730 (QU579_12970) clpC 2768764..2771337 (-) 2574 WP_025627834.1 ATP-dependent chaperone ClpB Regulator
  QU579_RS12735 (QU579_12975) pgeF 2771485..2772213 (-) 729 WP_025639993.1 peptidoglycan editing factor PgeF -
  QU579_RS12740 (QU579_12980) rluD 2772215..2773192 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QU579_RS12745 (QU579_12985) comL 2773329..2774057 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  QU579_RS12750 (QU579_12990) - 2774192..2775673 (+) 1482 WP_342821110.1 lytic transglycosylase F -
  QU579_RS12755 (QU579_12995) hpf 2776004..2776330 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  QU579_RS12760 (QU579_13000) pheA 2776574..2777752 (+) 1179 WP_005468591.1 prephenate dehydratase -
  QU579_RS12765 (QU579_13005) yjjX 2777777..2778310 (+) 534 WP_021453510.1 inosine/xanthosine triphosphatase -
  QU579_RS12770 (QU579_13010) trpR 2778359..2778670 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=775374 QU579_RS12745 WP_005460312.1 2773329..2774057(+) (comL) [Vibrio parahaemolyticus strain NJIFDCVp52]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=775374 QU579_RS12745 WP_005460312.1 2773329..2774057(+) (comL) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGCGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405