Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PGA57_RS05945 Genome accession   NZ_CP116016
Coordinates   1149346..1150017 (-) Length   223 a.a.
NCBI ID   WP_271259925.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SRCM217410     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1144346..1155017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGA57_RS05920 (PGA57_05920) rpsO 1144660..1144929 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  PGA57_RS05925 (PGA57_05925) rpsT 1145206..1145460 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  PGA57_RS05930 (PGA57_05930) holA 1145515..1146543 (-) 1029 WP_064777102.1 DNA polymerase III subunit delta -
  PGA57_RS05935 (PGA57_05935) comEC 1146544..1148658 (-) 2115 WP_271259924.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PGA57_RS05940 (PGA57_05940) - 1148799..1149287 (-) 489 WP_004270740.1 ComE operon protein 2 -
  PGA57_RS05945 (PGA57_05945) comEA 1149346..1150017 (-) 672 WP_271259925.1 helix-hairpin-helix domain-containing protein Machinery gene
  PGA57_RS05950 (PGA57_05950) - 1150094..1151140 (-) 1047 WP_080563410.1 SepM family pheromone-processing serine protease -
  PGA57_RS05955 (PGA57_05955) coaD 1151142..1151636 (-) 495 WP_271259926.1 pantetheine-phosphate adenylyltransferase -
  PGA57_RS05960 (PGA57_05960) rsmD 1151648..1152202 (-) 555 WP_039099193.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PGA57_RS05965 (PGA57_05965) - 1152208..1152498 (-) 291 WP_004270748.1 YlbG family protein -
  PGA57_RS05970 (PGA57_05970) - 1152518..1153606 (-) 1089 WP_065825727.1 CAP-associated domain-containing protein -
  PGA57_RS05975 (PGA57_05975) - 1153619..1154806 (-) 1188 WP_004270744.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24827.45 Da        Isoelectric Point: 9.7580

>NTDB_id=775322 PGA57_RS05945 WP_271259925.1 1149346..1150017(-) (comEA) [Latilactobacillus curvatus strain SRCM217410]
MWRDYWQRYRRFWWVPCLVIILLGGGVFWQHSRQQRFLSTNQQLMAQSTKRKVKAKPVKQKKSVSKGGFVDIKGAVADPG
IYPICVAKTRLFEVLKQAGDVTEAADTSQLNLAQTLSDQLIIYVPTKGEAVQAEELVKAADEPQAATDNQAGASPISTDA
KINLNQADATQLQTLNGIGPKKAEQIIAYRDEQGQFKQIEDLQKVGGIGPKTFEQLRPQICVN

Nucleotide


Download         Length: 672 bp        

>NTDB_id=775322 PGA57_RS05945 WP_271259925.1 1149346..1150017(-) (comEA) [Latilactobacillus curvatus strain SRCM217410]
ATGTGGCGCGACTATTGGCAACGGTATCGTCGATTCTGGTGGGTACCTTGTTTGGTGATAATTTTACTTGGTGGTGGTGT
GTTTTGGCAGCATAGTCGGCAACAACGTTTTCTATCAACCAATCAACAATTGATGGCGCAATCAACTAAGCGAAAAGTGA
AGGCAAAACCCGTCAAACAGAAGAAAAGCGTCTCAAAAGGTGGGTTTGTCGATATTAAAGGCGCTGTGGCAGATCCAGGG
ATTTATCCGATTTGTGTTGCAAAGACGCGTTTATTTGAGGTGCTGAAACAAGCGGGGGATGTGACCGAAGCAGCGGATAC
GAGTCAGTTGAACTTAGCGCAAACATTGAGTGACCAACTTATTATCTATGTGCCAACTAAGGGAGAAGCGGTGCAAGCTG
AAGAATTAGTGAAAGCGGCAGACGAGCCACAGGCTGCGACTGACAATCAAGCGGGAGCCAGTCCGATATCAACTGATGCT
AAAATCAACCTAAACCAAGCGGATGCGACACAATTGCAAACGCTAAATGGCATCGGTCCTAAAAAAGCTGAACAAATAAT
TGCATATCGGGATGAGCAAGGGCAGTTTAAACAAATCGAAGATCTTCAAAAAGTTGGGGGAATTGGGCCAAAAACGTTTG
AACAATTACGGCCACAAATTTGTGTTAATTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(160-221)

SLBB domain (SLBB)

(70-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

64.53

100

0.677
  comEA Lactococcus lactis subsp. cremoris KW2

36.283

100

0.368