Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   PGA57_RS05935 Genome accession   NZ_CP116016
Coordinates   1146544..1148658 (-) Length   704 a.a.
NCBI ID   WP_271259924.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SRCM217410     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1141544..1153658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGA57_RS05910 (PGA57_05910) - 1141712..1142656 (-) 945 WP_271259922.1 hypothetical protein -
  PGA57_RS05915 (PGA57_05915) - 1142739..1144457 (-) 1719 WP_271259923.1 ribonuclease J -
  PGA57_RS05920 (PGA57_05920) rpsO 1144660..1144929 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  PGA57_RS05925 (PGA57_05925) rpsT 1145206..1145460 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  PGA57_RS05930 (PGA57_05930) holA 1145515..1146543 (-) 1029 WP_064777102.1 DNA polymerase III subunit delta -
  PGA57_RS05935 (PGA57_05935) comEC 1146544..1148658 (-) 2115 WP_271259924.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PGA57_RS05940 (PGA57_05940) - 1148799..1149287 (-) 489 WP_004270740.1 ComE operon protein 2 -
  PGA57_RS05945 (PGA57_05945) comEA 1149346..1150017 (-) 672 WP_271259925.1 helix-hairpin-helix domain-containing protein Machinery gene
  PGA57_RS05950 (PGA57_05950) - 1150094..1151140 (-) 1047 WP_080563410.1 SepM family pheromone-processing serine protease -
  PGA57_RS05955 (PGA57_05955) coaD 1151142..1151636 (-) 495 WP_271259926.1 pantetheine-phosphate adenylyltransferase -
  PGA57_RS05960 (PGA57_05960) rsmD 1151648..1152202 (-) 555 WP_039099193.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PGA57_RS05965 (PGA57_05965) - 1152208..1152498 (-) 291 WP_004270748.1 YlbG family protein -
  PGA57_RS05970 (PGA57_05970) - 1152518..1153606 (-) 1089 WP_065825727.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 79835.25 Da        Isoelectric Point: 9.4793

>NTDB_id=775320 PGA57_RS05935 WP_271259924.1 1146544..1148658(-) (comEC) [Latilactobacillus curvatus strain SRCM217410]
MVSGLVLCLGGCRFWLARRTYEQPVRPNNQVYKIQPDTIKVAGDQIQLMAQGQNDDQRVVCYYRCQSSAEKRRWQTTNQP
LLLAGDIELERIQGATNRNEFDYARFMGQQKHCFYQANIIDGTVFRRIPPQGWLDWFHQRRQQGLIYLRQLPPALSFHAE
ALLCGVRESDGLAYQNVLGQLGIIHLLSLSGLHVFYFVTIIRRLATLCRVPREWVNVSLFCLLPLYALFVGGGTSITRAI
GLILLRLICEVSHFQQSRLDSWSWVLLVNLLWQPYLLISMGGLLSYLMAFGLIYQRRHGTFTTAFWLGLLSLPVCLRFNY
RWHILTILINGIVAPIFLPVMLGLIMVAICLWPVSHMIVWLEEGLLTTLYKGLAWIATFPYATITFGKIQLIPLFLIVIG
TLWLMASTGRRAKWGWGAVISLYVISFIGIHFNPVGRVIMFDIGQGDSLLIQQPFNRHNLLIDTGGRLALPQEKWQRRRI
VSRAEKVTVNYLYSCGIDHLEAIALSHQDADHIGDLNEIMQHIRVKRLICAAGLPQNRQFQRQVRPHLTKVAIEPYLADQ
HFMIGHQQINVLAPVVAGPGGNADSLVLQTQIGGASWLFTGDLEKAGEVAIVDRYPQLRVDYLKVGHHGSQTASDPQSIA
TWQVKGALISAGRHNRYGHPHAATLQTLKRANVPFWNTADCGMLEWRYGFGQVPMIKTTLKDCD

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=775320 PGA57_RS05935 WP_271259924.1 1146544..1148658(-) (comEC) [Latilactobacillus curvatus strain SRCM217410]
ATGGTCAGTGGACTGGTACTGTGTTTAGGCGGTTGCCGTTTTTGGCTGGCACGGCGCACCTACGAACAGCCGGTTAGACC
AAATAATCAAGTATATAAGATTCAACCCGATACGATCAAAGTGGCTGGCGATCAGATTCAATTAATGGCGCAGGGGCAGA
ATGATGACCAACGTGTTGTTTGCTACTATCGCTGCCAGAGTTCAGCGGAAAAACGCCGTTGGCAAACGACGAATCAGCCG
TTATTATTAGCGGGTGATATTGAATTAGAGCGTATCCAAGGTGCTACTAACCGGAATGAGTTCGACTATGCGCGCTTTAT
GGGGCAGCAAAAGCATTGTTTCTATCAAGCAAATATAATTGACGGAACGGTCTTTAGACGCATTCCACCACAAGGTTGGC
TAGATTGGTTCCACCAACGGCGCCAACAGGGGCTGATTTATCTCCGACAATTGCCACCAGCGTTGAGTTTTCATGCAGAG
GCGTTGTTATGTGGTGTTCGAGAGTCAGATGGCCTGGCCTACCAGAATGTGTTAGGTCAATTGGGGATTATTCATTTATT
GAGTTTATCCGGATTGCATGTATTCTACTTTGTGACAATCATTCGTCGATTGGCAACGCTGTGTCGAGTCCCGCGTGAAT
GGGTGAATGTTAGCTTGTTTTGTTTGCTACCCCTTTATGCGTTGTTTGTGGGGGGAGGCACGAGTATTACACGCGCTATC
GGGCTGATCTTACTACGATTAATCTGCGAAGTAAGTCATTTTCAGCAATCGCGTTTAGATAGTTGGAGTTGGGTATTGCT
GGTCAATCTTTTATGGCAGCCGTATTTATTAATCAGTATGGGGGGATTGCTGAGCTATCTGATGGCTTTTGGGTTGATTT
ATCAGCGGCGCCATGGTACTTTTACAACGGCATTTTGGCTAGGCTTGTTAAGTTTACCGGTGTGCTTGCGGTTTAATTAT
CGTTGGCATATCTTGACGATTTTGATTAATGGGATTGTCGCGCCGATTTTCTTACCAGTCATGTTGGGTTTGATTATGGT
AGCGATTTGCTTATGGCCTGTTAGTCATATGATAGTTTGGTTAGAAGAAGGCCTGCTAACGACGCTGTATAAAGGATTAG
CTTGGATTGCAACGTTCCCATATGCGACAATTACTTTCGGTAAAATCCAGCTAATACCACTCTTTTTAATTGTGATAGGC
ACACTATGGTTGATGGCAAGTACTGGTCGGCGAGCAAAGTGGGGCTGGGGGGCTGTTATCAGCCTGTATGTCATTAGTTT
TATTGGTATCCACTTTAATCCGGTTGGCCGCGTGATTATGTTTGATATCGGGCAAGGCGATAGTCTGTTGATTCAACAAC
CCTTCAATCGACATAACCTGTTAATTGACACCGGCGGCCGACTAGCTTTACCGCAAGAAAAGTGGCAACGGCGGCGAATT
GTGAGTCGGGCGGAAAAAGTAACAGTTAATTACCTCTACAGCTGTGGCATTGATCATTTAGAGGCAATCGCATTATCGCA
TCAGGATGCTGATCATATAGGGGACTTAAATGAAATTATGCAACATATCCGAGTTAAACGGTTGATTTGTGCTGCGGGCT
TACCGCAAAACCGGCAGTTTCAACGGCAAGTGCGGCCGCATCTTACAAAAGTTGCAATTGAGCCTTATTTGGCGGACCAA
CATTTTATGATTGGTCACCAACAAATCAATGTGTTAGCGCCAGTGGTGGCCGGACCAGGCGGGAATGCTGACTCACTCGT
TTTGCAAACGCAAATTGGTGGTGCGAGTTGGTTATTTACTGGTGATTTAGAAAAAGCGGGTGAAGTGGCAATCGTTGATC
GCTACCCACAATTACGCGTTGATTACCTAAAGGTGGGTCACCATGGCAGTCAAACGGCGAGTGATCCCCAGTCAATTGCG
ACGTGGCAGGTAAAAGGGGCGTTGATTTCTGCGGGACGCCATAATCGTTATGGTCATCCACATGCCGCAACGTTGCAGAC
TTTAAAACGTGCGAACGTCCCATTTTGGAATACGGCTGACTGTGGGATGCTGGAATGGCGCTATGGTTTTGGCCAAGTGC
CAATGATTAAAACAACACTAAAGGATTGTGACTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(173-408)

Metallo-beta-lactamase superfamily (Lactamase_B)

(444-651)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

62.942

100

0.632