Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PF986_RS17520 Genome accession   NZ_CP116013
Coordinates   3548141..3549094 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124349     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3543141..3554094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF986_RS17495 (PF986_17495) - 3543185..3544612 (+) 1428 WP_088056326.1 sensor histidine kinase -
  PF986_RS17500 (PF986_17500) rapC 3544771..3545919 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  PF986_RS17505 (PF986_17505) phrC 3545903..3546022 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  PF986_RS17510 (PF986_17510) - 3546173..3546283 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  PF986_RS17515 (PF986_17515) - 3546363..3547727 (-) 1365 WP_110085395.1 aspartate kinase -
  PF986_RS17520 (PF986_17520) ceuB 3548141..3549094 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  PF986_RS17525 (PF986_17525) - 3549084..3550031 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  PF986_RS17530 (PF986_17530) - 3550025..3550783 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  PF986_RS17535 (PF986_17535) - 3550805..3551749 (+) 945 WP_021495116.1 siderophore ABC transporter substrate-binding protein -
  PF986_RS17540 (PF986_17540) - 3551791..3553215 (-) 1425 WP_063636989.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=775224 PF986_RS17520 WP_003156332.1 3548141..3549094(+) (ceuB) [Bacillus velezensis strain SRCM124349]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=775224 PF986_RS17520 WP_003156332.1 3548141..3549094(+) (ceuB) [Bacillus velezensis strain SRCM124349]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTTGTCAAAGGCAGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTCTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533