Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   PF977_RS20750 Genome accession   NZ_CP116012
Coordinates   3935878..3936276 (+) Length   132 a.a.
NCBI ID   WP_015715226.1    Uniprot ID   A0AA96URL7
Organism   Bacillus subtilis strain SRCM124333     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3930878..3941276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS20725 (PF977_20725) hxlR 3931612..3931974 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  PF977_RS20730 (PF977_20730) hxlA 3932207..3932839 (+) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  PF977_RS20735 (PF977_20735) hxlB 3932845..3933402 (+) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  PF977_RS20740 (PF977_20740) tlpC 3933513..3935234 (+) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  PF977_RS20745 (PF977_20745) nucA/comI 3935402..3935851 (+) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  PF977_RS20750 (PF977_20750) nin/comJ 3935878..3936276 (+) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  PF977_RS20755 (PF977_20755) bglC 3936313..3937746 (-) 1434 WP_003234614.1 6-phospho-beta-glucosidase -
  PF977_RS20760 (PF977_20760) yckD 3937900..3938232 (-) 333 WP_015252849.1 YckD family protein -
  PF977_RS20765 (PF977_20765) - 3938314..3938661 (-) 348 WP_003234619.1 RDD family protein -
  PF977_RS20770 (PF977_20770) - 3938668..3938863 (-) 196 Protein_4084 hypothetical protein -
  PF977_RS20775 (PF977_20775) yckB 3939025..3939888 (+) 864 WP_015715225.1 transporter substrate-binding domain-containing protein -
  PF977_RS20780 (PF977_20780) yckA 3939898..3940578 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.90 Da        Isoelectric Point: 4.8991

>NTDB_id=775144 PF977_RS20750 WP_015715226.1 3935878..3936276(+) (nin/comJ) [Bacillus subtilis strain SRCM124333]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVSSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=775144 PF977_RS20750 WP_015715226.1 3935878..3936276(+) (nin/comJ) [Bacillus subtilis strain SRCM124333]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAGCTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985