Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QU520_RS05865 Genome accession   NZ_CP128613
Coordinates   1188984..1189721 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WL297     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1183984..1194721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU520_RS05840 (QU520_05840) tyrA 1184977..1186098 (+) 1122 WP_000225216.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QU520_RS05845 (QU520_05845) pheA 1186141..1187301 (-) 1161 WP_000200109.1 bifunctional chorismate mutase/prephenate dehydratase -
  QU520_RS05850 (QU520_05850) pheL 1187400..1187447 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QU520_RS05855 (QU520_05855) raiA 1187551..1187892 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QU520_RS05860 (QU520_05860) - 1188152..1188863 (-) 712 Protein_1142 IS4 family transposase -
  QU520_RS05865 (QU520_05865) comL 1188984..1189721 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QU520_RS05870 (QU520_05870) rluD 1189856..1190836 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QU520_RS05875 (QU520_05875) yfiH 1190833..1191564 (+) 732 WP_000040132.1 purine nucleoside phosphorylase YfiH -
  QU520_RS05880 (QU520_05880) clpC 1191694..1194267 (+) 2574 WP_002431841.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=775090 QU520_RS05865 WP_000197686.1 1188984..1189721(-) (comL) [Escherichia coli strain WL297]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=775090 QU520_RS05865 WP_000197686.1 1188984..1189721(-) (comL) [Escherichia coli strain WL297]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376