Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   PF977_RS01880 Genome accession   NZ_CP116012
Coordinates   366491..367636 (-) Length   381 a.a.
NCBI ID   WP_015714890.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM124333     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 361491..372636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS01845 (PF977_01845) - 362044..362604 (-) 561 WP_015714897.1 hypothetical protein -
  PF977_RS01850 (PF977_01850) - 362597..363244 (-) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  PF977_RS01855 (PF977_01855) - 363247..364044 (-) 798 WP_231573542.1 hypothetical protein -
  PF977_RS01860 (PF977_01860) - 364054..364728 (-) 675 WP_015714894.1 hypothetical protein -
  PF977_RS01865 (PF977_01865) - 364715..365503 (-) 789 WP_015714893.1 membrane protein -
  PF977_RS01870 (PF977_01870) - 365652..366131 (-) 480 WP_015714892.1 hypothetical protein -
  PF977_RS01875 (PF977_01875) phrF 366388..366507 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  PF977_RS01880 (PF977_01880) rapF 366491..367636 (-) 1146 WP_015714890.1 response regulator aspartate phosphatase RapF Regulator
  PF977_RS22715 - 367639..367869 (+) 231 WP_015714889.1 hypothetical protein -
  PF977_RS01885 (PF977_01885) ywhK 367866..369221 (+) 1356 WP_015250986.1 YncE family protein -
  PF977_RS01890 (PF977_01890) ywhL 369260..370636 (+) 1377 WP_015714888.1 YncE family protein -
  PF977_RS01895 (PF977_01895) albG 370642..371343 (-) 702 WP_003227556.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  PF977_RS01900 (PF977_01900) albF 371340..372620 (-) 1281 WP_271259419.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45571.01 Da        Isoelectric Point: 4.9848

>NTDB_id=775077 PF977_RS01880 WP_015714890.1 366491..367636(-) (rapF) [Bacillus subtilis strain SRCM124333]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLNLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=775077 PF977_RS01880 WP_015714890.1 366491..367636(-) (rapF) [Bacillus subtilis strain SRCM124333]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTAATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-290)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.688

100

0.987
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572