Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QU520_RS02050 Genome accession   NZ_CP128613
Coordinates   439464..439931 (-) Length   155 a.a.
NCBI ID   WP_000340160.1    Uniprot ID   -
Organism   Escherichia coli strain WL297     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434464..444931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU520_RS02025 (QU520_02025) rpsG 434605..435075 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  QU520_RS02030 (QU520_02030) fusA 435172..437286 (+) 2115 WP_000124703.1 elongation factor G -
  QU520_RS02035 (QU520_02035) tuf 437357..438541 (+) 1185 WP_000031783.1 elongation factor Tu -
  QU520_RS02040 (QU520_02040) bfd 438724..438918 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QU520_RS02045 (QU520_02045) bfr 438991..439467 (+) 477 WP_000675515.1 bacterioferritin -
  QU520_RS02050 (QU520_02050) pilD 439464..439931 (-) 468 WP_000340160.1 A24 family peptidase Machinery gene
  QU520_RS02055 (QU520_02055) rpsJ 440310..440621 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  QU520_RS02060 (QU520_02060) rplC 440654..441283 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  QU520_RS02065 (QU520_02065) rplD 441294..441899 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  QU520_RS02070 (QU520_02070) rplW 441896..442198 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  QU520_RS02075 (QU520_02075) rplB 442216..443037 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  QU520_RS02080 (QU520_02080) rpsS 443054..443332 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  QU520_RS02085 (QU520_02085) rplV 443347..443679 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  QU520_RS02090 (QU520_02090) rpsC 443697..444398 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  QU520_RS02095 (QU520_02095) rplP 444411..444821 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17068.23 Da        Isoelectric Point: 8.4746

>NTDB_id=775076 QU520_RS02050 WP_000340160.1 439464..439931(-) (pilD) [Escherichia coli strain WL297]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLAYALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKDSLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=775076 QU520_RS02050 WP_000340160.1 439464..439931(-) (pilD) [Escherichia coli strain WL297]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAGGTTTGTAATCCTGACGGTTTAGCCT
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGATTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.094

81.935

0.361