Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PF976_RS12290 Genome accession   NZ_CP116011
Coordinates   2376275..2377075 (-) Length   266 a.a.
NCBI ID   WP_013352825.1    Uniprot ID   A0A9P1JIH1
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2371275..2382075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS12255 (PF976_12255) - 2371768..2372400 (+) 633 WP_013352819.1 helix-turn-helix domain-containing protein -
  PF976_RS12260 (PF976_12260) - 2372693..2372830 (+) 138 WP_014470646.1 hypothetical protein -
  PF976_RS12265 (PF976_12265) - 2372924..2374042 (+) 1119 WP_038463265.1 NADH-dependent flavin oxidoreductase -
  PF976_RS12270 (PF976_12270) - 2374169..2374381 (+) 213 WP_014470647.1 spore germination protein -
  PF976_RS12275 (PF976_12275) - 2374506..2374718 (+) 213 WP_013352823.1 spore germination protein -
  PF976_RS12280 (PF976_12280) alr 2374904..2376085 (+) 1182 WP_013352824.1 alanine racemase -
  PF976_RS12285 (PF976_12285) - 2376146..2376280 (+) 135 WP_014470649.1 hypothetical protein -
  PF976_RS12290 (PF976_12290) spo0A 2376275..2377075 (-) 801 WP_013352825.1 sporulation transcription factor Spo0A Regulator
  PF976_RS12295 (PF976_12295) spoIVB 2377356..2378636 (-) 1281 WP_014470651.1 SpoIVB peptidase -
  PF976_RS12300 (PF976_12300) recN 2378800..2380530 (-) 1731 WP_013352827.1 DNA repair protein RecN Machinery gene
  PF976_RS12305 (PF976_12305) ahrC 2380562..2381011 (-) 450 WP_013352828.1 transcriptional regulator AhrC/ArgR -
  PF976_RS12310 (PF976_12310) - 2381108..2381953 (-) 846 WP_013352829.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29572.07 Da        Isoelectric Point: 6.3903

>NTDB_id=775033 PF976_RS12290 WP_013352825.1 2376275..2377075(-) (spo0A) [Bacillus amyloliquefaciens strain SRCM124317]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVLGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELAKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=775033 PF976_RS12290 WP_013352825.1 2376275..2377075(-) (spo0A) [Bacillus amyloliquefaciens strain SRCM124317]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGCTCGGCGTTGCTTATAACGGACAGGAATGCCTTTCTTTGTTTAAAGATAAAAATCCCGATGTGCTCG
TTTTAGACATTATTATGCCGCATCTGGACGGTCTTGCGGTTTTGGAGCGCCTCCGGGAATCAGAACTTGCGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGTGCGTCCTACTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGCAATGTCAGCAGCGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGTCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTTCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCATGCCATTGAAGTTGCATGGAGCAGGGGAAATATTGACTCCATTTCTTCGCTGTTCGGGTATACTGTGAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCATA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951