Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PF976_RS12300 Genome accession   NZ_CP116011
Coordinates   2378800..2380530 (-) Length   576 a.a.
NCBI ID   WP_013352827.1    Uniprot ID   A0A9P1JI53
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2373800..2385530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS12270 (PF976_12270) - 2374169..2374381 (+) 213 WP_014470647.1 spore germination protein -
  PF976_RS12275 (PF976_12275) - 2374506..2374718 (+) 213 WP_013352823.1 spore germination protein -
  PF976_RS12280 (PF976_12280) alr 2374904..2376085 (+) 1182 WP_013352824.1 alanine racemase -
  PF976_RS12285 (PF976_12285) - 2376146..2376280 (+) 135 WP_014470649.1 hypothetical protein -
  PF976_RS12290 (PF976_12290) spo0A 2376275..2377075 (-) 801 WP_013352825.1 sporulation transcription factor Spo0A Regulator
  PF976_RS12295 (PF976_12295) spoIVB 2377356..2378636 (-) 1281 WP_014470651.1 SpoIVB peptidase -
  PF976_RS12300 (PF976_12300) recN 2378800..2380530 (-) 1731 WP_013352827.1 DNA repair protein RecN Machinery gene
  PF976_RS12305 (PF976_12305) ahrC 2380562..2381011 (-) 450 WP_013352828.1 transcriptional regulator AhrC/ArgR -
  PF976_RS12310 (PF976_12310) - 2381108..2381953 (-) 846 WP_013352829.1 TlyA family RNA methyltransferase -
  PF976_RS12315 (PF976_12315) dxs 2381950..2383851 (-) 1902 WP_014472093.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PF976_RS12320 (PF976_12320) - 2383994..2384884 (-) 891 WP_013352831.1 polyprenyl synthetase family protein -
  PF976_RS12325 (PF976_12325) - 2384874..2385128 (-) 255 WP_013352832.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64076.93 Da        Isoelectric Point: 4.7328

>NTDB_id=775034 PF976_RS12300 WP_013352827.1 2378800..2380530(-) (recN) [Bacillus amyloliquefaciens strain SRCM124317]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYREGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSETVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLETLKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSADEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKELKDGRTTTHVTPLSQQDKVAEIGRMIAGVEVTDLTKR
HAKELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=775034 PF976_RS12300 WP_013352827.1 2378800..2380530(-) (recN) [Bacillus amyloliquefaciens strain SRCM124317]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATCTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGAGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTAGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATCGCGGCTTTAAGGGAGATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAGCATTTAGAGCTTTTAGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTTCAG
GCTTACCGTGAAGGCTATGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAGAGCGAGCAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCGGCTAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AGGAAGAACGGAAGCAAATATCCAACTTTGAGAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGTGAG
CAGGGGGGTCTCGACTGGGTCGGAATGGCTTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCCGAAACTGTGTCAAGTTCCTATTATCTGCTGGAAGATGCAACCTTTCAGATGCGCAATTTGTTAGATGATCTGGAAT
ATGATCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGATATTCTGGAATACGGCTCAAAGATAGAAGAGGAAATTGATCAAATCGAGAACCGTGACAGCCACCTTGAAACGCT
GAAGAAGGAACTGGAGTCCGTGGGCAAAGATGTGGCCGTAGAAGCCGCCAACTTATCAAAAATCAGAAAAGCATGGGCCA
AAAAACTGGCTGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCTACGTTTGATACGGAATTTCTTGTG
AAAACCGATCCGTCAGCCGATGAAGCGCCAGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGCATTGACCTTGT
GAAATTTTTAATTTCAACAAATACCGGTGAGCCTCTCAAGCCGCTGTCAAAGGTTGCGTCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGATAAAGAGTATTTTTTCTTCTCAGCAGGATGTCACTTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCGCAGGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACACATCT
CCCGCAGGTTGCCGCCATGGCGGACACGCACCTTTTGATCGCGAAAGAATTAAAAGACGGCCGGACGACGACGCATGTCA
CGCCGCTTTCCCAGCAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACAGATCTGACAAAACGG
CATGCAAAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.062

100

0.891